Hb_010080_010

Information

Type -
Description -
Location Contig10080: 13481-18739
Sequence    

Annotation

kegg
ID rcu:RCOM_1600710
description hypothetical protein
nr
ID XP_012073673.1
description PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08117 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00500: 13318-13462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010080_010 0.0 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
2 Hb_000120_250 0.0993123024 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
3 Hb_100790_010 0.1053969769 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000975_240 0.1125456563 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
5 Hb_011386_050 0.1156830004 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
6 Hb_001277_280 0.1173491197 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
7 Hb_000340_130 0.1247918501 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
8 Hb_000905_120 0.1255002072 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
9 Hb_000979_060 0.1258036467 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
10 Hb_001322_020 0.12588366 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
11 Hb_000211_100 0.1271464284 - - PREDICTED: biotin synthase [Jatropha curcas]
12 Hb_000369_010 0.1273633146 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003874_010 0.1279315447 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
14 Hb_029388_010 0.1283534635 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
15 Hb_000959_220 0.1287731526 - - zinc finger protein, putative [Ricinus communis]
16 Hb_004712_190 0.1302291853 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
17 Hb_011671_310 0.1309407999 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
18 Hb_146255_020 0.1333212065 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
19 Hb_006555_040 0.1343514894 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
20 Hb_006816_100 0.1360073348 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_010080_010 Hb_010080_010 Hb_000120_250 Hb_000120_250 Hb_010080_010--Hb_000120_250 Hb_100790_010 Hb_100790_010 Hb_010080_010--Hb_100790_010 Hb_000975_240 Hb_000975_240 Hb_010080_010--Hb_000975_240 Hb_011386_050 Hb_011386_050 Hb_010080_010--Hb_011386_050 Hb_001277_280 Hb_001277_280 Hb_010080_010--Hb_001277_280 Hb_000340_130 Hb_000340_130 Hb_010080_010--Hb_000340_130 Hb_011671_310 Hb_011671_310 Hb_000120_250--Hb_011671_310 Hb_029388_010 Hb_029388_010 Hb_000120_250--Hb_029388_010 Hb_002311_480 Hb_002311_480 Hb_000120_250--Hb_002311_480 Hb_000120_250--Hb_100790_010 Hb_000979_060 Hb_000979_060 Hb_000120_250--Hb_000979_060 Hb_146255_020 Hb_146255_020 Hb_100790_010--Hb_146255_020 Hb_006061_040 Hb_006061_040 Hb_100790_010--Hb_006061_040 Hb_001950_070 Hb_001950_070 Hb_100790_010--Hb_001950_070 Hb_001500_120 Hb_001500_120 Hb_100790_010--Hb_001500_120 Hb_003077_150 Hb_003077_150 Hb_000975_240--Hb_003077_150 Hb_009771_060 Hb_009771_060 Hb_000975_240--Hb_009771_060 Hb_011053_010 Hb_011053_010 Hb_000975_240--Hb_011053_010 Hb_000413_060 Hb_000413_060 Hb_000975_240--Hb_000413_060 Hb_000975_240--Hb_011386_050 Hb_004994_080 Hb_004994_080 Hb_011386_050--Hb_004994_080 Hb_011386_050--Hb_000340_130 Hb_002027_320 Hb_002027_320 Hb_011386_050--Hb_002027_320 Hb_006555_040 Hb_006555_040 Hb_011386_050--Hb_006555_040 Hb_007263_010 Hb_007263_010 Hb_011386_050--Hb_007263_010 Hb_000364_100 Hb_000364_100 Hb_011386_050--Hb_000364_100 Hb_011249_030 Hb_011249_030 Hb_001277_280--Hb_011249_030 Hb_006816_100 Hb_006816_100 Hb_001277_280--Hb_006816_100 Hb_004128_200 Hb_004128_200 Hb_001277_280--Hb_004128_200 Hb_000959_220 Hb_000959_220 Hb_001277_280--Hb_000959_220 Hb_001517_050 Hb_001517_050 Hb_001277_280--Hb_001517_050 Hb_001005_020 Hb_001005_020 Hb_001277_280--Hb_001005_020 Hb_005975_010 Hb_005975_010 Hb_000340_130--Hb_005975_010 Hb_005649_100 Hb_005649_100 Hb_000340_130--Hb_005649_100 Hb_002686_080 Hb_002686_080 Hb_000340_130--Hb_002686_080 Hb_000012_270 Hb_000012_270 Hb_000340_130--Hb_000012_270 Hb_000002_120 Hb_000002_120 Hb_000340_130--Hb_000002_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.5813 4.06676 20.3463 4.57305 3.70696 3.13008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.06622 4.4102 4.04503 3.86413 3.30696

CAGE analysis