Hb_001950_070

Information

Type -
Description -
Location Contig1950: 42937-44131
Sequence    

Annotation

kegg
ID rcu:RCOM_1153470
description cyclin d, putative
nr
ID XP_002524919.1
description cyclin d, putative [Ricinus communis]
swissprot
ID Q9FGQ7
description Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=2 SV=1
trembl
ID B9SG00
description Cyclin d, putative OS=Ricinus communis GN=RCOM_1153470 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin d3-2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001950_070 0.0 - - cyclin d, putative [Ricinus communis]
2 Hb_001077_070 0.0942888373 - - 60S ribosomal protein L9, putative [Ricinus communis]
3 Hb_001191_080 0.1077068969 - - protein with unknown function [Ricinus communis]
4 Hb_004096_160 0.1085834415 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
5 Hb_004712_190 0.1169151679 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
6 Hb_003449_100 0.121611892 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
7 Hb_100790_010 0.1240959337 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000940_050 0.1249087254 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
9 Hb_002615_070 0.1251259839 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
10 Hb_014231_020 0.1254721745 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
11 Hb_000703_160 0.1265077234 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
12 Hb_009449_060 0.1270235861 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
13 Hb_001500_120 0.1280913476 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000089_210 0.128146299 - - unknown [Medicago truncatula]
15 Hb_006452_180 0.1311857275 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
16 Hb_005977_030 0.1316248306 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
17 Hb_006615_050 0.1318276015 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
18 Hb_146255_020 0.1318710179 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
19 Hb_005649_100 0.1321131399 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
20 Hb_000019_190 0.1327452501 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]

Gene co-expression network

sample Hb_001950_070 Hb_001950_070 Hb_001077_070 Hb_001077_070 Hb_001950_070--Hb_001077_070 Hb_001191_080 Hb_001191_080 Hb_001950_070--Hb_001191_080 Hb_004096_160 Hb_004096_160 Hb_001950_070--Hb_004096_160 Hb_004712_190 Hb_004712_190 Hb_001950_070--Hb_004712_190 Hb_003449_100 Hb_003449_100 Hb_001950_070--Hb_003449_100 Hb_100790_010 Hb_100790_010 Hb_001950_070--Hb_100790_010 Hb_006615_050 Hb_006615_050 Hb_001077_070--Hb_006615_050 Hb_004807_020 Hb_004807_020 Hb_001077_070--Hb_004807_020 Hb_001025_090 Hb_001025_090 Hb_001077_070--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_001077_070--Hb_000866_310 Hb_002909_040 Hb_002909_040 Hb_001077_070--Hb_002909_040 Hb_007741_130 Hb_007741_130 Hb_001191_080--Hb_007741_130 Hb_001191_080--Hb_004712_190 Hb_021576_150 Hb_021576_150 Hb_001191_080--Hb_021576_150 Hb_000926_200 Hb_000926_200 Hb_001191_080--Hb_000926_200 Hb_014231_020 Hb_014231_020 Hb_001191_080--Hb_014231_020 Hb_005245_120 Hb_005245_120 Hb_001191_080--Hb_005245_120 Hb_000958_080 Hb_000958_080 Hb_004096_160--Hb_000958_080 Hb_004096_160--Hb_002909_040 Hb_009449_060 Hb_009449_060 Hb_004096_160--Hb_009449_060 Hb_000089_210 Hb_000089_210 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_004712_190--Hb_014231_020 Hb_001500_120 Hb_001500_120 Hb_004712_190--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_004712_190--Hb_005977_030 Hb_005144_210 Hb_005144_210 Hb_004712_190--Hb_005144_210 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_000703_160 Hb_000703_160 Hb_003449_100--Hb_000703_160 Hb_007919_110 Hb_007919_110 Hb_003449_100--Hb_007919_110 Hb_002249_020 Hb_002249_020 Hb_003449_100--Hb_002249_020 Hb_002304_050 Hb_002304_050 Hb_003449_100--Hb_002304_050 Hb_000753_160 Hb_000753_160 Hb_003449_100--Hb_000753_160 Hb_003449_100--Hb_000958_080 Hb_010080_010 Hb_010080_010 Hb_100790_010--Hb_010080_010 Hb_146255_020 Hb_146255_020 Hb_100790_010--Hb_146255_020 Hb_006061_040 Hb_006061_040 Hb_100790_010--Hb_006061_040 Hb_000120_250 Hb_000120_250 Hb_100790_010--Hb_000120_250 Hb_100790_010--Hb_001500_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85614 3.37928 8.82565 4.60642 1.83775 3.15524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07799 3.23157 1.82096 2.20852 1.70171

CAGE analysis