Hb_000008_370

Information

Type -
Description -
Location Contig8: 445994-448559
Sequence    

Annotation

kegg
ID rcu:RCOM_0154130
description hypothetical protein
nr
ID XP_012064824.1
description PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SWB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0154130 PE=4 SV=1
Gene Ontology
ID GO:0009536
description PREDICTED: uncharacterized protein LOC105628095

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58696: 445960-448524
cDNA
(Sanger)
(ID:Location)		 050_P22.ab1: 445960-448480 , 052_F19.ab1: 445960-448480

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_370 0.0 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
2 Hb_000035_240 0.1129925684 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000390_090 0.1147642333 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
4 Hb_009252_060 0.1272117716 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
5 Hb_001301_340 0.1288122757 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
6 Hb_001450_030 0.1298594283 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
7 Hb_068194_010 0.1322509054 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
8 Hb_000926_080 0.1363432899 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
9 Hb_001322_230 0.1372918859 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
10 Hb_001804_090 0.1375302565 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
11 Hb_001178_010 0.1413931052 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
12 Hb_001863_120 0.1427825715 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
13 Hb_015807_160 0.1434383905 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
14 Hb_001073_080 0.1453135396 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
15 Hb_000740_040 0.1465483717 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
16 Hb_002893_110 0.1472266103 transcription factor TF Family: DBP PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
17 Hb_027472_100 0.1473252697 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
18 Hb_007199_020 0.1473441511 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
19 Hb_000413_060 0.147349814 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
20 Hb_005883_080 0.1477226165 - - type 2A protein phosphatase-2 [Populus trichocarpa]

Gene co-expression network

sample Hb_000008_370 Hb_000008_370 Hb_000035_240 Hb_000035_240 Hb_000008_370--Hb_000035_240 Hb_000390_090 Hb_000390_090 Hb_000008_370--Hb_000390_090 Hb_009252_060 Hb_009252_060 Hb_000008_370--Hb_009252_060 Hb_001301_340 Hb_001301_340 Hb_000008_370--Hb_001301_340 Hb_001450_030 Hb_001450_030 Hb_000008_370--Hb_001450_030 Hb_068194_010 Hb_068194_010 Hb_000008_370--Hb_068194_010 Hb_000035_240--Hb_001301_340 Hb_001946_140 Hb_001946_140 Hb_000035_240--Hb_001946_140 Hb_001329_090 Hb_001329_090 Hb_000035_240--Hb_001329_090 Hb_000035_240--Hb_000390_090 Hb_000035_240--Hb_009252_060 Hb_000413_240 Hb_000413_240 Hb_000390_090--Hb_000413_240 Hb_000390_090--Hb_009252_060 Hb_000413_060 Hb_000413_060 Hb_000390_090--Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_019053_060 Hb_019053_060 Hb_009252_060--Hb_019053_060 Hb_002893_110 Hb_002893_110 Hb_009252_060--Hb_002893_110 Hb_001863_120 Hb_001863_120 Hb_009252_060--Hb_001863_120 Hb_007416_050 Hb_007416_050 Hb_009252_060--Hb_007416_050 Hb_009252_060--Hb_000413_060 Hb_007894_050 Hb_007894_050 Hb_001301_340--Hb_007894_050 Hb_000317_260 Hb_000317_260 Hb_001301_340--Hb_000317_260 Hb_000394_180 Hb_000394_180 Hb_001301_340--Hb_000394_180 Hb_001369_790 Hb_001369_790 Hb_001301_340--Hb_001369_790 Hb_000392_550 Hb_000392_550 Hb_001301_340--Hb_000392_550 Hb_001767_060 Hb_001767_060 Hb_001450_030--Hb_001767_060 Hb_001450_030--Hb_000390_090 Hb_000152_210 Hb_000152_210 Hb_001450_030--Hb_000152_210 Hb_000176_010 Hb_000176_010 Hb_001450_030--Hb_000176_010 Hb_003181_060 Hb_003181_060 Hb_001450_030--Hb_003181_060 Hb_000676_020 Hb_000676_020 Hb_068194_010--Hb_000676_020 Hb_000820_140 Hb_000820_140 Hb_068194_010--Hb_000820_140 Hb_006445_020 Hb_006445_020 Hb_068194_010--Hb_006445_020 Hb_009851_010 Hb_009851_010 Hb_068194_010--Hb_009851_010 Hb_001102_050 Hb_001102_050 Hb_068194_010--Hb_001102_050 Hb_001322_230 Hb_001322_230 Hb_068194_010--Hb_001322_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.21169 5.16928 45.0475 19.655 4.5097 7.08248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3836 34.7753 5.45147 11.1268 23.6254

CAGE analysis