Hb_068194_010

Information

Type -
Description -
Location Contig68194: 19675-23708
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23740g
description POPTRDRAFT_725124; hypothetical protein
nr
ID XP_002315341.2
description hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
swissprot
ID P93354
description Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3
trembl
ID B9HUV7
description Histone H2B OS=Populus trichocarpa GN=POPTR_0010s23740g PE=3 SV=2
Gene Ontology
ID GO:0000786
description probable histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53866: 19626-20245 , PASA_asmbl_53867: 20465-32851
cDNA
(Sanger)
(ID:Location)		 002_H10.ab1: 19626-20245 , 015_J18.ab1: 19640-19770 , 028_H17.ab1: 19626-19868

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068194_010 0.0 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
2 Hb_000676_020 0.0832281369 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
3 Hb_000820_140 0.1004735782 - - histone H4 [Zea mays]
4 Hb_006445_020 0.1117900903 - - hypothetical protein L484_026741 [Morus notabilis]
5 Hb_009851_010 0.1207588931 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
6 Hb_001102_050 0.1226018651 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
7 Hb_001322_230 0.1242709003 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
8 Hb_000189_130 0.1273354901 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
9 Hb_000008_370 0.1322509054 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
10 Hb_002205_140 0.1342035862 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
11 Hb_002027_440 0.1350924531 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007199_020 0.1374045489 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
13 Hb_027506_040 0.137899055 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
14 Hb_000331_420 0.1395738161 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
15 Hb_000926_080 0.1400550179 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
16 Hb_154038_020 0.14054652 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
17 Hb_001804_090 0.1408733804 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
18 Hb_000005_110 0.1481615559 - - histone H2B1 [Hevea brasiliensis]
19 Hb_001587_040 0.1495888954 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
20 Hb_003602_060 0.1498476348 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_068194_010 Hb_068194_010 Hb_000676_020 Hb_000676_020 Hb_068194_010--Hb_000676_020 Hb_000820_140 Hb_000820_140 Hb_068194_010--Hb_000820_140 Hb_006445_020 Hb_006445_020 Hb_068194_010--Hb_006445_020 Hb_009851_010 Hb_009851_010 Hb_068194_010--Hb_009851_010 Hb_001102_050 Hb_001102_050 Hb_068194_010--Hb_001102_050 Hb_001322_230 Hb_001322_230 Hb_068194_010--Hb_001322_230 Hb_027506_040 Hb_027506_040 Hb_000676_020--Hb_027506_040 Hb_002498_160 Hb_002498_160 Hb_000676_020--Hb_002498_160 Hb_000676_020--Hb_009851_010 Hb_000676_020--Hb_000820_140 Hb_002205_140 Hb_002205_140 Hb_000676_020--Hb_002205_140 Hb_000820_140--Hb_001322_230 Hb_000307_070 Hb_000307_070 Hb_000820_140--Hb_000307_070 Hb_001587_040 Hb_001587_040 Hb_000820_140--Hb_001587_040 Hb_004348_040 Hb_004348_040 Hb_000820_140--Hb_004348_040 Hb_006445_020--Hb_027506_040 Hb_006445_020--Hb_002205_140 Hb_006445_020--Hb_000676_020 Hb_003602_060 Hb_003602_060 Hb_006445_020--Hb_003602_060 Hb_118282_010 Hb_118282_010 Hb_006445_020--Hb_118282_010 Hb_027402_020 Hb_027402_020 Hb_009851_010--Hb_027402_020 Hb_000331_420 Hb_000331_420 Hb_009851_010--Hb_000331_420 Hb_009851_010--Hb_002498_160 Hb_009851_010--Hb_001102_050 Hb_000926_080 Hb_000926_080 Hb_001102_050--Hb_000926_080 Hb_002027_320 Hb_002027_320 Hb_001102_050--Hb_002027_320 Hb_002871_040 Hb_002871_040 Hb_001102_050--Hb_002871_040 Hb_001804_090 Hb_001804_090 Hb_001102_050--Hb_001804_090 Hb_003835_110 Hb_003835_110 Hb_001102_050--Hb_003835_110 Hb_000003_780 Hb_000003_780 Hb_001102_050--Hb_000003_780 Hb_002053_010 Hb_002053_010 Hb_001322_230--Hb_002053_010 Hb_001711_120 Hb_001711_120 Hb_001322_230--Hb_001711_120 Hb_001322_230--Hb_003602_060 Hb_000560_040 Hb_000560_040 Hb_001322_230--Hb_000560_040 Hb_001863_070 Hb_001863_070 Hb_001322_230--Hb_001863_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.24211 4.92891 59.4729 21.7242 3.30328 3.38979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6357 22.1264 10.8739 14.8847 26.4583

CAGE analysis