Hb_027402_020

Information

Type -
Description -
Location Contig27402: 9641-13183
Sequence    

Annotation

kegg
ID tcc:TCM_014060
description Uncharacterized protein isoform 1
nr
ID XP_012080292.1
description PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
swissprot
ID O13737
description Uncharacterized endoplasmic reticulum membrane protein C16E8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.02 PE=4 SV=2
trembl
ID A0A067K4Z0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11647 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28690: 10014-13035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_020 0.0 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
2 Hb_009851_010 0.1023029516 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
3 Hb_000364_170 0.1303396252 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
4 Hb_006775_120 0.1339001778 - - exonuclease-like protein [Oryza sativa Japonica Group]
5 Hb_002205_140 0.1347399496 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
6 Hb_000406_030 0.1411353121 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
7 Hb_000331_570 0.1463294133 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
8 Hb_000676_020 0.1464786707 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
9 Hb_002498_160 0.1476945685 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
10 Hb_002044_020 0.1494097236 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
11 Hb_002027_320 0.1494851713 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
12 Hb_029695_070 0.1504215684 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
13 Hb_000331_420 0.1510007524 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
14 Hb_002783_220 0.1553623378 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
15 Hb_000057_110 0.1554874365 - - PREDICTED: kinesin-13A [Jatropha curcas]
16 Hb_002871_040 0.1580487667 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
17 Hb_011828_040 0.1629110705 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
18 Hb_001102_050 0.1636359043 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
19 Hb_000200_300 0.1643692436 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
20 Hb_068194_010 0.165015608 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]

Gene co-expression network

sample Hb_027402_020 Hb_027402_020 Hb_009851_010 Hb_009851_010 Hb_027402_020--Hb_009851_010 Hb_000364_170 Hb_000364_170 Hb_027402_020--Hb_000364_170 Hb_006775_120 Hb_006775_120 Hb_027402_020--Hb_006775_120 Hb_002205_140 Hb_002205_140 Hb_027402_020--Hb_002205_140 Hb_000406_030 Hb_000406_030 Hb_027402_020--Hb_000406_030 Hb_000331_570 Hb_000331_570 Hb_027402_020--Hb_000331_570 Hb_000676_020 Hb_000676_020 Hb_009851_010--Hb_000676_020 Hb_000331_420 Hb_000331_420 Hb_009851_010--Hb_000331_420 Hb_068194_010 Hb_068194_010 Hb_009851_010--Hb_068194_010 Hb_002498_160 Hb_002498_160 Hb_009851_010--Hb_002498_160 Hb_001102_050 Hb_001102_050 Hb_009851_010--Hb_001102_050 Hb_011381_040 Hb_011381_040 Hb_000364_170--Hb_011381_040 Hb_000057_110 Hb_000057_110 Hb_000364_170--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000364_170--Hb_000200_300 Hb_000364_170--Hb_006775_120 Hb_002783_220 Hb_002783_220 Hb_000364_170--Hb_002783_220 Hb_005754_040 Hb_005754_040 Hb_000364_170--Hb_005754_040 Hb_000000_330 Hb_000000_330 Hb_006775_120--Hb_000000_330 Hb_000926_060 Hb_000926_060 Hb_006775_120--Hb_000926_060 Hb_006775_120--Hb_005754_040 Hb_000395_280 Hb_000395_280 Hb_006775_120--Hb_000395_280 Hb_006775_120--Hb_002783_220 Hb_002205_140--Hb_000676_020 Hb_002205_140--Hb_000364_170 Hb_019654_050 Hb_019654_050 Hb_002205_140--Hb_019654_050 Hb_002205_140--Hb_011381_040 Hb_013405_070 Hb_013405_070 Hb_002205_140--Hb_013405_070 Hb_027506_040 Hb_027506_040 Hb_002205_140--Hb_027506_040 Hb_000310_120 Hb_000310_120 Hb_000406_030--Hb_000310_120 Hb_001232_090 Hb_001232_090 Hb_000406_030--Hb_001232_090 Hb_000406_030--Hb_013405_070 Hb_000331_350 Hb_000331_350 Hb_000406_030--Hb_000331_350 Hb_001587_040 Hb_001587_040 Hb_000406_030--Hb_001587_040 Hb_000406_030--Hb_000331_570 Hb_000331_570--Hb_000331_420 Hb_002871_040 Hb_002871_040 Hb_000331_570--Hb_002871_040 Hb_002627_040 Hb_002627_040 Hb_000331_570--Hb_002627_040 Hb_101334_020 Hb_101334_020 Hb_000331_570--Hb_101334_020 Hb_001390_100 Hb_001390_100 Hb_000331_570--Hb_001390_100 Hb_070624_010 Hb_070624_010 Hb_000331_570--Hb_070624_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.68083 1.37604 48.6882 20.0331 4.05353 7.12346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.61631 9.33663 11.5396 16.8413 20.5973

CAGE analysis