Hb_000406_030

Information

Type -
Description -
Location Contig406: 7756-30607
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03070g
description POPTRDRAFT_570919; hypothetical protein
nr
ID XP_010097336.1
description Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
swissprot
ID Q9SQT8
description Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1
trembl
ID W9R4C9
description Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase OS=Morus notabilis GN=L484_010212 PE=3 SV=1
Gene Ontology
ID GO:0003855
description bifunctional 3-dehydroquinate dehydratase shikimate chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40249: 7717-13033 , PASA_asmbl_40250: 21079-22147 , PASA_asmbl_40251: 31214-35865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_030 0.0 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
2 Hb_000310_120 0.104632375 - - PREDICTED: probable transaldolase [Jatropha curcas]
3 Hb_001232_090 0.1138400601 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
4 Hb_013405_070 0.1275666675 - - ferric-chelate reductase, putative [Ricinus communis]
5 Hb_000331_350 0.1291399434 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
6 Hb_001587_040 0.1303895016 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
7 Hb_000331_570 0.134556615 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
8 Hb_003050_360 0.1355974597 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
9 Hb_003529_040 0.136171842 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
10 Hb_001329_070 0.1382916115 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
11 Hb_001377_530 0.1388244793 - - NC domain-containing family protein [Populus trichocarpa]
12 Hb_027402_020 0.1411353121 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
13 Hb_011828_040 0.1457159854 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
14 Hb_000088_240 0.1458319496 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_003398_040 0.1460930602 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
16 Hb_006951_030 0.1502081245 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
17 Hb_005903_020 0.1507420429 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
18 Hb_000589_170 0.1509309373 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
19 Hb_000935_080 0.1539550406 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000689_050 0.1541516691 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000406_030 Hb_000406_030 Hb_000310_120 Hb_000310_120 Hb_000406_030--Hb_000310_120 Hb_001232_090 Hb_001232_090 Hb_000406_030--Hb_001232_090 Hb_013405_070 Hb_013405_070 Hb_000406_030--Hb_013405_070 Hb_000331_350 Hb_000331_350 Hb_000406_030--Hb_000331_350 Hb_001587_040 Hb_001587_040 Hb_000406_030--Hb_001587_040 Hb_000331_570 Hb_000331_570 Hb_000406_030--Hb_000331_570 Hb_003680_220 Hb_003680_220 Hb_000310_120--Hb_003680_220 Hb_000589_170 Hb_000589_170 Hb_000310_120--Hb_000589_170 Hb_000500_220 Hb_000500_220 Hb_000310_120--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000310_120--Hb_008725_270 Hb_000310_120--Hb_013405_070 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_001232_090--Hb_013405_070 Hb_005271_140 Hb_005271_140 Hb_001232_090--Hb_005271_140 Hb_011381_040 Hb_011381_040 Hb_001232_090--Hb_011381_040 Hb_004155_020 Hb_004155_020 Hb_001232_090--Hb_004155_020 Hb_000800_020 Hb_000800_020 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_013405_070--Hb_008725_270 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_010172_110 Hb_010172_110 Hb_000331_350--Hb_010172_110 Hb_188281_030 Hb_188281_030 Hb_000331_350--Hb_188281_030 Hb_000331_350--Hb_000310_120 Hb_002007_320 Hb_002007_320 Hb_000331_350--Hb_002007_320 Hb_000057_110 Hb_000057_110 Hb_000331_350--Hb_000057_110 Hb_000310_060 Hb_000310_060 Hb_001587_040--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_001587_040--Hb_003398_040 Hb_005527_060 Hb_005527_060 Hb_001587_040--Hb_005527_060 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_000307_070 Hb_000307_070 Hb_001587_040--Hb_000307_070 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_000331_420 Hb_000331_420 Hb_000331_570--Hb_000331_420 Hb_002871_040 Hb_002871_040 Hb_000331_570--Hb_002871_040 Hb_002627_040 Hb_002627_040 Hb_000331_570--Hb_002627_040 Hb_101334_020 Hb_101334_020 Hb_000331_570--Hb_101334_020 Hb_000331_570--Hb_001390_100 Hb_070624_010 Hb_070624_010 Hb_000331_570--Hb_070624_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0677 1.09058 11.7419 6.50978 0.458742 0.594446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16383 1.90177 2.1262 5.17471 5.016

CAGE analysis