Hb_000331_350

Information

Type -
Description -
Location Contig331: 290041-294184
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09580g
description POPTRDRAFT_570216; hypothetical protein
nr
ID KDP30961.1
description hypothetical protein JCGZ_11337 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K405
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11337 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34793: 290893-291717 , PASA_asmbl_34794: 293905-294181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_350 0.0 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
2 Hb_010172_110 0.1024696807 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_188281_030 0.1262726101 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
4 Hb_000310_120 0.1275823609 - - PREDICTED: probable transaldolase [Jatropha curcas]
5 Hb_002007_320 0.1280189882 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
6 Hb_000057_110 0.128992175 - - PREDICTED: kinesin-13A [Jatropha curcas]
7 Hb_000406_030 0.1291399434 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
8 Hb_000206_230 0.1361584707 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000049_160 0.138054061 - - tyrosine decarboxylase family protein [Populus trichocarpa]
10 Hb_001329_070 0.1382760047 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
11 Hb_000684_030 0.1423002053 - - syntaxin, putative [Ricinus communis]
12 Hb_000012_080 0.1448893882 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
13 Hb_001221_030 0.1476486905 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
14 Hb_013405_070 0.1478139117 - - ferric-chelate reductase, putative [Ricinus communis]
15 Hb_002193_060 0.1486630897 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
16 Hb_002486_020 0.149430367 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002027_440 0.1512342864 - - conserved hypothetical protein [Ricinus communis]
18 Hb_124677_030 0.1515854133 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
19 Hb_002811_280 0.1522795003 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
20 Hb_003602_060 0.1523531647 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_350 Hb_000331_350 Hb_010172_110 Hb_010172_110 Hb_000331_350--Hb_010172_110 Hb_188281_030 Hb_188281_030 Hb_000331_350--Hb_188281_030 Hb_000310_120 Hb_000310_120 Hb_000331_350--Hb_000310_120 Hb_002007_320 Hb_002007_320 Hb_000331_350--Hb_002007_320 Hb_000057_110 Hb_000057_110 Hb_000331_350--Hb_000057_110 Hb_000406_030 Hb_000406_030 Hb_000331_350--Hb_000406_030 Hb_007002_040 Hb_007002_040 Hb_010172_110--Hb_007002_040 Hb_000189_170 Hb_000189_170 Hb_010172_110--Hb_000189_170 Hb_002811_280 Hb_002811_280 Hb_010172_110--Hb_002811_280 Hb_010172_110--Hb_000310_120 Hb_001329_070 Hb_001329_070 Hb_010172_110--Hb_001329_070 Hb_124677_030 Hb_124677_030 Hb_188281_030--Hb_124677_030 Hb_000345_460 Hb_000345_460 Hb_188281_030--Hb_000345_460 Hb_000282_050 Hb_000282_050 Hb_188281_030--Hb_000282_050 Hb_002027_440 Hb_002027_440 Hb_188281_030--Hb_002027_440 Hb_001221_030 Hb_001221_030 Hb_188281_030--Hb_001221_030 Hb_000310_120--Hb_000406_030 Hb_003680_220 Hb_003680_220 Hb_000310_120--Hb_003680_220 Hb_000589_170 Hb_000589_170 Hb_000310_120--Hb_000589_170 Hb_000500_220 Hb_000500_220 Hb_000310_120--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000310_120--Hb_008725_270 Hb_013405_070 Hb_013405_070 Hb_000310_120--Hb_013405_070 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_003371_070 Hb_003371_070 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_000935_040 Hb_000935_040 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_000023_310 Hb_000023_310 Hb_002007_320--Hb_000023_310 Hb_000684_030 Hb_000684_030 Hb_000057_110--Hb_000684_030 Hb_000200_300 Hb_000200_300 Hb_000057_110--Hb_000200_300 Hb_000364_170 Hb_000364_170 Hb_000057_110--Hb_000364_170 Hb_000057_110--Hb_000012_080 Hb_006829_060 Hb_006829_060 Hb_000057_110--Hb_006829_060 Hb_000057_110--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_000406_030--Hb_001232_090 Hb_000406_030--Hb_013405_070 Hb_001587_040 Hb_001587_040 Hb_000406_030--Hb_001587_040 Hb_000331_570 Hb_000331_570 Hb_000406_030--Hb_000331_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186877 0.12391 1.98406 1.99957 0.11418 0.154522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.532605 0.649518 0.474708 0.96844 1.1458

CAGE analysis