Hb_007002_040

Information

Type transcription factor
Description TF Family: PHD
Location Contig7002: 32421-37865
Sequence    

Annotation

kegg
ID rcu:RCOM_1347450
description DNA replication regulator dpb11, putative
nr
ID XP_002515302.1
description DNA replication regulator dpb11, putative [Ricinus communis]
swissprot
ID O04251
description BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=3 SV=3
trembl
ID B9RNG3
description DNA replication regulator dpb11, putative OS=Ricinus communis GN=RCOM_1347450 PE=4 SV=1
Gene Ontology
ID GO:0005515
description dna replication regulator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54811: 33312-33947 , PASA_asmbl_54812: 33957-35137 , PASA_asmbl_54815: 36096-36422 , PASA_asmbl_54816: 37324-37894
cDNA
(Sanger)
(ID:Location)		 032_J12r.ab1: 30410-31970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007002_040 0.0 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
2 Hb_010172_110 0.1068186232 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_000189_170 0.1507104127 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_000331_350 0.1534009803 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
5 Hb_000086_670 0.1535141049 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
6 Hb_028872_160 0.1544644871 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
7 Hb_124677_030 0.1599917757 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
8 Hb_002811_280 0.1634885639 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
9 Hb_000406_030 0.1678867582 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
10 Hb_001080_050 0.1741817512 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
11 Hb_000032_250 0.175648696 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
12 Hb_006951_030 0.177314279 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
13 Hb_188281_030 0.1788757023 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
14 Hb_001329_070 0.1791611094 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_004650_030 0.1793843021 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
16 Hb_001232_090 0.184028395 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
17 Hb_000110_050 0.1849571276 - - -
18 Hb_003813_060 0.1855752016 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011828_040 0.1893441908 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
20 Hb_000310_120 0.1900123635 - - PREDICTED: probable transaldolase [Jatropha curcas]

Gene co-expression network

sample Hb_007002_040 Hb_007002_040 Hb_010172_110 Hb_010172_110 Hb_007002_040--Hb_010172_110 Hb_000189_170 Hb_000189_170 Hb_007002_040--Hb_000189_170 Hb_000331_350 Hb_000331_350 Hb_007002_040--Hb_000331_350 Hb_000086_670 Hb_000086_670 Hb_007002_040--Hb_000086_670 Hb_028872_160 Hb_028872_160 Hb_007002_040--Hb_028872_160 Hb_124677_030 Hb_124677_030 Hb_007002_040--Hb_124677_030 Hb_010172_110--Hb_000331_350 Hb_010172_110--Hb_000189_170 Hb_002811_280 Hb_002811_280 Hb_010172_110--Hb_002811_280 Hb_000310_120 Hb_000310_120 Hb_010172_110--Hb_000310_120 Hb_001329_070 Hb_001329_070 Hb_010172_110--Hb_001329_070 Hb_003055_110 Hb_003055_110 Hb_000189_170--Hb_003055_110 Hb_083940_010 Hb_083940_010 Hb_000189_170--Hb_083940_010 Hb_114310_100 Hb_114310_100 Hb_000189_170--Hb_114310_100 Hb_001221_330 Hb_001221_330 Hb_000189_170--Hb_001221_330 Hb_188281_030 Hb_188281_030 Hb_000331_350--Hb_188281_030 Hb_000331_350--Hb_000310_120 Hb_002007_320 Hb_002007_320 Hb_000331_350--Hb_002007_320 Hb_000057_110 Hb_000057_110 Hb_000331_350--Hb_000057_110 Hb_000406_030 Hb_000406_030 Hb_000331_350--Hb_000406_030 Hb_001080_050 Hb_001080_050 Hb_000086_670--Hb_001080_050 Hb_000960_090 Hb_000960_090 Hb_000086_670--Hb_000960_090 Hb_003784_040 Hb_003784_040 Hb_000086_670--Hb_003784_040 Hb_000010_300 Hb_000010_300 Hb_000086_670--Hb_000010_300 Hb_001780_080 Hb_001780_080 Hb_000086_670--Hb_001780_080 Hb_004032_210 Hb_004032_210 Hb_028872_160--Hb_004032_210 Hb_000307_220 Hb_000307_220 Hb_028872_160--Hb_000307_220 Hb_000032_250 Hb_000032_250 Hb_028872_160--Hb_000032_250 Hb_011214_110 Hb_011214_110 Hb_028872_160--Hb_011214_110 Hb_002518_090 Hb_002518_090 Hb_028872_160--Hb_002518_090 Hb_124677_030--Hb_188281_030 Hb_000940_210 Hb_000940_210 Hb_124677_030--Hb_000940_210 Hb_000345_460 Hb_000345_460 Hb_124677_030--Hb_000345_460 Hb_001232_090 Hb_001232_090 Hb_124677_030--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_124677_030--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_124677_030--Hb_000684_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0198949 0.0688033 0.996575 0.857737 0.0484114 0.0388355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195089 0.219317 0.293858 0.591383 0.210714

CAGE analysis