Hb_083940_010

Information

Type -
Description -
Location Contig83940: 2320-3175
Sequence    

Annotation

kegg
ID rcu:RCOM_1598220
description Zeamatin precursor, putative
nr
ID XP_002510548.1
description Zeamatin precursor, putative [Ricinus communis]
swissprot
ID P83332
description Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1
trembl
ID B9R8A5
description Zeamatin, putative OS=Ricinus communis GN=RCOM_1598220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60030: 2210-3171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083940_010 0.0 - - Zeamatin precursor, putative [Ricinus communis]
2 Hb_001147_050 0.1368307575 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
3 Hb_000193_260 0.1406064953 - - PREDICTED: protein NEN1 [Jatropha curcas]
4 Hb_000189_170 0.1448113927 - - calcium ion binding protein, putative [Ricinus communis]
5 Hb_002534_130 0.1453666365 - - membrane associated ring finger 1,8, putative [Ricinus communis]
6 Hb_005214_170 0.1521152807 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
7 Hb_001221_330 0.152238815 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
8 Hb_002693_030 0.1538666663 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
9 Hb_005181_160 0.1564154788 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
10 Hb_005903_020 0.1578483558 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
11 Hb_002232_430 0.1590040644 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
12 Hb_061256_010 0.162503476 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
13 Hb_009571_010 0.163551828 - - early-responsive to dehydration family protein [Populus trichocarpa]
14 Hb_000330_090 0.1645838597 - - ornithine carbamoyltransferase, putative [Ricinus communis]
15 Hb_005686_130 0.1660991296 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
16 Hb_002333_070 0.1664785918 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
17 Hb_011282_050 0.1709243212 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
18 Hb_001633_090 0.1726054381 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
19 Hb_001946_220 0.1727414353 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
20 Hb_007426_220 0.172747553 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_083940_010 Hb_083940_010 Hb_001147_050 Hb_001147_050 Hb_083940_010--Hb_001147_050 Hb_000193_260 Hb_000193_260 Hb_083940_010--Hb_000193_260 Hb_000189_170 Hb_000189_170 Hb_083940_010--Hb_000189_170 Hb_002534_130 Hb_002534_130 Hb_083940_010--Hb_002534_130 Hb_005214_170 Hb_005214_170 Hb_083940_010--Hb_005214_170 Hb_001221_330 Hb_001221_330 Hb_083940_010--Hb_001221_330 Hb_001269_620 Hb_001269_620 Hb_001147_050--Hb_001269_620 Hb_000330_090 Hb_000330_090 Hb_001147_050--Hb_000330_090 Hb_002693_030 Hb_002693_030 Hb_001147_050--Hb_002693_030 Hb_002232_430 Hb_002232_430 Hb_001147_050--Hb_002232_430 Hb_001277_050 Hb_001277_050 Hb_001147_050--Hb_001277_050 Hb_006637_030 Hb_006637_030 Hb_001147_050--Hb_006637_030 Hb_000193_260--Hb_002534_130 Hb_061256_010 Hb_061256_010 Hb_000193_260--Hb_061256_010 Hb_026198_010 Hb_026198_010 Hb_000193_260--Hb_026198_010 Hb_000009_520 Hb_000009_520 Hb_000193_260--Hb_000009_520 Hb_000193_260--Hb_002693_030 Hb_000193_260--Hb_001147_050 Hb_010172_110 Hb_010172_110 Hb_000189_170--Hb_010172_110 Hb_003055_110 Hb_003055_110 Hb_000189_170--Hb_003055_110 Hb_007002_040 Hb_007002_040 Hb_000189_170--Hb_007002_040 Hb_114310_100 Hb_114310_100 Hb_000189_170--Hb_114310_100 Hb_000189_170--Hb_001221_330 Hb_002534_130--Hb_002693_030 Hb_005686_130 Hb_005686_130 Hb_002534_130--Hb_005686_130 Hb_002534_130--Hb_001269_620 Hb_015778_040 Hb_015778_040 Hb_002534_130--Hb_015778_040 Hb_002534_130--Hb_001277_050 Hb_005214_170--Hb_000330_090 Hb_007199_020 Hb_007199_020 Hb_005214_170--Hb_007199_020 Hb_005946_150 Hb_005946_150 Hb_005214_170--Hb_005946_150 Hb_005214_170--Hb_000193_260 Hb_000331_420 Hb_000331_420 Hb_005214_170--Hb_000331_420 Hb_001804_090 Hb_001804_090 Hb_005214_170--Hb_001804_090 Hb_005181_160 Hb_005181_160 Hb_001221_330--Hb_005181_160 Hb_022250_020 Hb_022250_020 Hb_001221_330--Hb_022250_020 Hb_002217_100 Hb_002217_100 Hb_001221_330--Hb_002217_100 Hb_004931_110 Hb_004931_110 Hb_001221_330--Hb_004931_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.27327 18.8669 69.5408 30.9224 4.14333 6.6399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3822 19.8123 40.0644 39.3878 18.5265

CAGE analysis