Hb_114310_100

Information

Type -
Description -
Location Contig114310: 58072-65691
Sequence    

Annotation

kegg
ID rcu:RCOM_1595090
description glucose-1-phosphate adenylyltransferase, putative (EC:2.7.7.27)
nr
ID XP_002510419.1
description glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
swissprot
ID P55233
description Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1
trembl
ID B9R7X6
description Glucose-1-phosphate adenylyltransferase OS=Ricinus communis GN=RCOM_1595090 PE=3 SV=1
Gene Ontology
ID GO:0009507
description glucose-1-phosphate adenylyltransferase large chloroplastic amyloplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114310_100 0.0 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
2 Hb_000189_170 0.1524105339 - - calcium ion binding protein, putative [Ricinus communis]
3 Hb_000935_080 0.1617768335 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000406_030 0.1716062896 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
5 Hb_000317_270 0.1719240368 - - Uncharacterized protein TCM_001673 [Theobroma cacao]
6 Hb_000941_060 0.1767649375 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
7 Hb_004052_100 0.1787117786 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
8 Hb_006951_030 0.1829059912 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
9 Hb_003055_110 0.1876317333 - - conserved hypothetical protein [Ricinus communis]
10 Hb_033312_080 0.1895682766 - - aldose-1-epimerase, putative [Ricinus communis]
11 Hb_001329_070 0.1904170933 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
12 Hb_007002_040 0.1934129334 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
13 Hb_010172_110 0.1997449213 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_003784_040 0.2039454101 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
15 Hb_004650_030 0.2050037936 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
16 Hb_002475_080 0.2071522461 transcription factor TF Family: PHD PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Jatropha curcas]
17 Hb_000500_340 0.2098054481 - - PREDICTED: exonuclease 1 [Jatropha curcas]
18 Hb_011512_010 0.210841487 - - glutathione s-transferase, putative [Ricinus communis]
19 Hb_000088_240 0.2111627579 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_002701_160 0.2129945862 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_114310_100 Hb_114310_100 Hb_000189_170 Hb_000189_170 Hb_114310_100--Hb_000189_170 Hb_000935_080 Hb_000935_080 Hb_114310_100--Hb_000935_080 Hb_000406_030 Hb_000406_030 Hb_114310_100--Hb_000406_030 Hb_000317_270 Hb_000317_270 Hb_114310_100--Hb_000317_270 Hb_000941_060 Hb_000941_060 Hb_114310_100--Hb_000941_060 Hb_004052_100 Hb_004052_100 Hb_114310_100--Hb_004052_100 Hb_010172_110 Hb_010172_110 Hb_000189_170--Hb_010172_110 Hb_003055_110 Hb_003055_110 Hb_000189_170--Hb_003055_110 Hb_083940_010 Hb_083940_010 Hb_000189_170--Hb_083940_010 Hb_007002_040 Hb_007002_040 Hb_000189_170--Hb_007002_040 Hb_001221_330 Hb_001221_330 Hb_000189_170--Hb_001221_330 Hb_000088_240 Hb_000088_240 Hb_000935_080--Hb_000088_240 Hb_000935_080--Hb_000941_060 Hb_006951_030 Hb_006951_030 Hb_000935_080--Hb_006951_030 Hb_006634_100 Hb_006634_100 Hb_000935_080--Hb_006634_100 Hb_002942_120 Hb_002942_120 Hb_000935_080--Hb_002942_120 Hb_004163_030 Hb_004163_030 Hb_000935_080--Hb_004163_030 Hb_000310_120 Hb_000310_120 Hb_000406_030--Hb_000310_120 Hb_001232_090 Hb_001232_090 Hb_000406_030--Hb_001232_090 Hb_013405_070 Hb_013405_070 Hb_000406_030--Hb_013405_070 Hb_000331_350 Hb_000331_350 Hb_000406_030--Hb_000331_350 Hb_001587_040 Hb_001587_040 Hb_000406_030--Hb_001587_040 Hb_000331_570 Hb_000331_570 Hb_000406_030--Hb_000331_570 Hb_000317_270--Hb_004052_100 Hb_000317_270--Hb_000941_060 Hb_033312_080 Hb_033312_080 Hb_000317_270--Hb_033312_080 Hb_000317_270--Hb_000935_080 Hb_001195_050 Hb_001195_050 Hb_000317_270--Hb_001195_050 Hb_003398_040 Hb_003398_040 Hb_000941_060--Hb_003398_040 Hb_000941_060--Hb_000088_240 Hb_000941_060--Hb_002942_120 Hb_000009_420 Hb_000009_420 Hb_000941_060--Hb_000009_420 Hb_021346_050 Hb_021346_050 Hb_000941_060--Hb_021346_050 Hb_001408_170 Hb_001408_170 Hb_004052_100--Hb_001408_170 Hb_011174_040 Hb_011174_040 Hb_004052_100--Hb_011174_040 Hb_001329_070 Hb_001329_070 Hb_004052_100--Hb_001329_070 Hb_003299_020 Hb_003299_020 Hb_004052_100--Hb_003299_020 Hb_004052_100--Hb_003398_040 Hb_001377_530 Hb_001377_530 Hb_004052_100--Hb_001377_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0652707 0.355478 6.23138 2.09381 0.0212868 0.0471384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.395718 1.07441 1.6914 1.89577 1.62017

CAGE analysis