Hb_000088_240

Information

Type transcription factor
Description TF Family: MYB
Location Contig88: 312152-313421
Sequence    

Annotation

kegg
ID rcu:RCOM_0176920
description r2r3-myb transcription factor, putative
nr
ID XP_002534486.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q38851
description Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1
trembl
ID B9T8B7
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0176920 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor myb6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61399: 312905-313497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_240 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_000935_080 0.1057749897 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000120_300 0.1155666858 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
4 Hb_001123_310 0.1252462434 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
5 Hb_001377_530 0.1276185246 - - NC domain-containing family protein [Populus trichocarpa]
6 Hb_001117_080 0.1369993772 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
7 Hb_005527_060 0.1406954603 - - malic enzyme, putative [Ricinus communis]
8 Hb_002942_120 0.1411150888 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
9 Hb_004163_030 0.1411487613 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
10 Hb_002871_130 0.1419999396 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
11 Hb_001232_090 0.1448868406 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
12 Hb_000012_320 0.1449677972 - - PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
13 Hb_001240_050 0.1452980491 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
14 Hb_003398_040 0.1455751886 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
15 Hb_000406_030 0.1458319496 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
16 Hb_006970_130 0.1479565433 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
17 Hb_006951_030 0.1481197223 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
18 Hb_000181_270 0.1514377573 - - ATP binding protein, putative [Ricinus communis]
19 Hb_038044_010 0.1527649772 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
20 Hb_000941_060 0.1529310201 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]

Gene co-expression network

sample Hb_000088_240 Hb_000088_240 Hb_000935_080 Hb_000935_080 Hb_000088_240--Hb_000935_080 Hb_000120_300 Hb_000120_300 Hb_000088_240--Hb_000120_300 Hb_001123_310 Hb_001123_310 Hb_000088_240--Hb_001123_310 Hb_001377_530 Hb_001377_530 Hb_000088_240--Hb_001377_530 Hb_001117_080 Hb_001117_080 Hb_000088_240--Hb_001117_080 Hb_005527_060 Hb_005527_060 Hb_000088_240--Hb_005527_060 Hb_000941_060 Hb_000941_060 Hb_000935_080--Hb_000941_060 Hb_006951_030 Hb_006951_030 Hb_000935_080--Hb_006951_030 Hb_006634_100 Hb_006634_100 Hb_000935_080--Hb_006634_100 Hb_002942_120 Hb_002942_120 Hb_000935_080--Hb_002942_120 Hb_004163_030 Hb_004163_030 Hb_000935_080--Hb_004163_030 Hb_000120_300--Hb_001123_310 Hb_000483_080 Hb_000483_080 Hb_000120_300--Hb_000483_080 Hb_021346_050 Hb_021346_050 Hb_000120_300--Hb_021346_050 Hb_000207_350 Hb_000207_350 Hb_000120_300--Hb_000207_350 Hb_010868_040 Hb_010868_040 Hb_000120_300--Hb_010868_040 Hb_001123_310--Hb_000207_350 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020 Hb_003050_360 Hb_003050_360 Hb_001377_530--Hb_003050_360 Hb_002641_120 Hb_002641_120 Hb_001377_530--Hb_002641_120 Hb_003398_040 Hb_003398_040 Hb_001377_530--Hb_003398_040 Hb_001377_530--Hb_001123_310 Hb_003299_020 Hb_003299_020 Hb_001377_530--Hb_003299_020 Hb_001408_170 Hb_001408_170 Hb_001377_530--Hb_001408_170 Hb_000098_180 Hb_000098_180 Hb_001117_080--Hb_000098_180 Hb_086639_050 Hb_086639_050 Hb_001117_080--Hb_086639_050 Hb_002432_050 Hb_002432_050 Hb_001117_080--Hb_002432_050 Hb_000649_330 Hb_000649_330 Hb_001117_080--Hb_000649_330 Hb_000567_090 Hb_000567_090 Hb_001117_080--Hb_000567_090 Hb_002249_170 Hb_002249_170 Hb_001117_080--Hb_002249_170 Hb_005527_060--Hb_002432_050 Hb_000310_060 Hb_000310_060 Hb_005527_060--Hb_000310_060 Hb_005527_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_005527_060--Hb_001587_040 Hb_000589_170 Hb_000589_170 Hb_005527_060--Hb_000589_170 Hb_000011_560 Hb_000011_560 Hb_005527_060--Hb_000011_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.978889 2.48367 15.9823 6.89165 0.522729 0.316843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.766883 0.603176 1.67013 4.83103 3.94554

CAGE analysis