Hb_021346_050

Information

Type -
Description -
Location Contig21346: 35669-42276
Sequence    

Annotation

kegg
ID rcu:RCOM_1449420
description xylulose kinase, putative (EC:2.7.1.17)
nr
ID XP_002512973.1
description xylulose kinase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHB4
description Xylulose kinase, putative OS=Ricinus communis GN=RCOM_1449420 PE=4 SV=1
Gene Ontology
ID GO:0009507
description xylulose kinase, putative

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22080: 35803-37231 , PASA_asmbl_22081: 39796-41430 , PASA_asmbl_22082: 41526-42257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021346_050 0.0 - - xylulose kinase, putative [Ricinus communis]
2 Hb_000120_300 0.1070211891 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
3 Hb_000032_610 0.1255532275 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
4 Hb_007943_180 0.1280732352 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
5 Hb_010868_040 0.1283947098 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
6 Hb_002942_120 0.1287003383 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
7 Hb_004102_080 0.1291851156 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
8 Hb_002636_060 0.1305430558 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002701_070 0.1318483658 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
10 Hb_000792_050 0.1412930804 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000207_350 0.1442014009 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
12 Hb_001123_310 0.1446932903 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
13 Hb_005237_020 0.1447268859 - - Kinesin heavy chain, putative [Ricinus communis]
14 Hb_000465_410 0.1454249815 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003398_040 0.1463294141 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
16 Hb_000926_040 0.1464247061 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
17 Hb_008705_030 0.1506218376 - - hypothetical protein JCGZ_13017 [Jatropha curcas]
18 Hb_000416_190 0.1522250634 - - -
19 Hb_000940_030 0.1533431767 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
20 Hb_004218_050 0.155118194 - - annexin [Manihot esculenta]

Gene co-expression network

sample Hb_021346_050 Hb_021346_050 Hb_000120_300 Hb_000120_300 Hb_021346_050--Hb_000120_300 Hb_000032_610 Hb_000032_610 Hb_021346_050--Hb_000032_610 Hb_007943_180 Hb_007943_180 Hb_021346_050--Hb_007943_180 Hb_010868_040 Hb_010868_040 Hb_021346_050--Hb_010868_040 Hb_002942_120 Hb_002942_120 Hb_021346_050--Hb_002942_120 Hb_004102_080 Hb_004102_080 Hb_021346_050--Hb_004102_080 Hb_001123_310 Hb_001123_310 Hb_000120_300--Hb_001123_310 Hb_000483_080 Hb_000483_080 Hb_000120_300--Hb_000483_080 Hb_000207_350 Hb_000207_350 Hb_000120_300--Hb_000207_350 Hb_000088_240 Hb_000088_240 Hb_000120_300--Hb_000088_240 Hb_000120_300--Hb_010868_040 Hb_000465_410 Hb_000465_410 Hb_000032_610--Hb_000465_410 Hb_005237_020 Hb_005237_020 Hb_000032_610--Hb_005237_020 Hb_002701_070 Hb_002701_070 Hb_000032_610--Hb_002701_070 Hb_001180_010 Hb_001180_010 Hb_000032_610--Hb_001180_010 Hb_019613_030 Hb_019613_030 Hb_000032_610--Hb_019613_030 Hb_048476_140 Hb_048476_140 Hb_000032_610--Hb_048476_140 Hb_004531_080 Hb_004531_080 Hb_007943_180--Hb_004531_080 Hb_003020_190 Hb_003020_190 Hb_007943_180--Hb_003020_190 Hb_003095_100 Hb_003095_100 Hb_007943_180--Hb_003095_100 Hb_007943_180--Hb_001123_310 Hb_003109_010 Hb_003109_010 Hb_007943_180--Hb_003109_010 Hb_007943_180--Hb_000120_300 Hb_004855_020 Hb_004855_020 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040 Hb_004218_050 Hb_004218_050 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_005527_060 Hb_005527_060 Hb_002942_120--Hb_005527_060 Hb_002942_120--Hb_007943_180 Hb_003915_020 Hb_003915_020 Hb_004102_080--Hb_003915_020 Hb_000175_200 Hb_000175_200 Hb_004102_080--Hb_000175_200 Hb_121089_010 Hb_121089_010 Hb_004102_080--Hb_121089_010 Hb_000926_040 Hb_000926_040 Hb_004102_080--Hb_000926_040 Hb_004102_080--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.375015 0.655025 10.4357 3.63477 0.130463 0.363635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.400068 0.380399 0.225301 2.57222 4.91307

CAGE analysis