Hb_005237_020

Information

Type -
Description -
Location Contig5237: 19006-30840
Sequence    

Annotation

kegg
ID rcu:RCOM_1589540
description Kinesin heavy chain, putative
nr
ID XP_002510177.1
description Kinesin heavy chain, putative [Ricinus communis]
swissprot
ID Q8GS71
description Kinesin-like protein FRA1 OS=Arabidopsis thaliana GN=FRA1 PE=1 SV=1
trembl
ID B9R784
description Kinesin-like protein OS=Ricinus communis GN=RCOM_1589540 PE=3 SV=1
Gene Ontology
ID GO:0005737
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46911: 19040-25992 , PASA_asmbl_46914: 30706-30926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005237_020 0.0 - - Kinesin heavy chain, putative [Ricinus communis]
2 Hb_000032_610 0.1025405928 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
3 Hb_000465_410 0.1030873388 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002701_070 0.121016122 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
5 Hb_019613_030 0.1323235901 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
6 Hb_000749_260 0.1389238696 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
7 Hb_021346_050 0.1447268859 - - xylulose kinase, putative [Ricinus communis]
8 Hb_001544_050 0.145310887 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
9 Hb_143004_020 0.1476101054 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
10 Hb_006153_150 0.1503443054 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
11 Hb_089966_010 0.1530633875 - - -
12 Hb_001491_020 0.1545733286 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_000352_280 0.1559638225 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
14 Hb_001180_010 0.1566196737 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
15 Hb_002374_470 0.1600545798 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
16 Hb_008053_030 0.1612116563 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
17 Hb_000390_210 0.1618895396 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_004994_330 0.162911741 - - DNA binding protein, putative [Ricinus communis]
19 Hb_147378_010 0.1657259687 - - -
20 Hb_002272_220 0.1669019193 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005237_020 Hb_005237_020 Hb_000032_610 Hb_000032_610 Hb_005237_020--Hb_000032_610 Hb_000465_410 Hb_000465_410 Hb_005237_020--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_005237_020--Hb_002701_070 Hb_019613_030 Hb_019613_030 Hb_005237_020--Hb_019613_030 Hb_000749_260 Hb_000749_260 Hb_005237_020--Hb_000749_260 Hb_021346_050 Hb_021346_050 Hb_005237_020--Hb_021346_050 Hb_000032_610--Hb_000465_410 Hb_000032_610--Hb_002701_070 Hb_001180_010 Hb_001180_010 Hb_000032_610--Hb_001180_010 Hb_000032_610--Hb_019613_030 Hb_048476_140 Hb_048476_140 Hb_000032_610--Hb_048476_140 Hb_000465_410--Hb_002701_070 Hb_001544_050 Hb_001544_050 Hb_000465_410--Hb_001544_050 Hb_000465_410--Hb_001180_010 Hb_004994_330 Hb_004994_330 Hb_000465_410--Hb_004994_330 Hb_000465_410--Hb_000749_260 Hb_002701_070--Hb_001544_050 Hb_002701_070--Hb_001180_010 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_010868_040 Hb_010868_040 Hb_002701_070--Hb_010868_040 Hb_002374_470 Hb_002374_470 Hb_019613_030--Hb_002374_470 Hb_000392_260 Hb_000392_260 Hb_019613_030--Hb_000392_260 Hb_003702_060 Hb_003702_060 Hb_019613_030--Hb_003702_060 Hb_000711_030 Hb_000711_030 Hb_019613_030--Hb_000711_030 Hb_029920_010 Hb_029920_010 Hb_019613_030--Hb_029920_010 Hb_000390_210 Hb_000390_210 Hb_000749_260--Hb_000390_210 Hb_000749_260--Hb_001544_050 Hb_147378_010 Hb_147378_010 Hb_000749_260--Hb_147378_010 Hb_000749_260--Hb_002701_070 Hb_000352_280 Hb_000352_280 Hb_000749_260--Hb_000352_280 Hb_000120_300 Hb_000120_300 Hb_021346_050--Hb_000120_300 Hb_021346_050--Hb_000032_610 Hb_007943_180 Hb_007943_180 Hb_021346_050--Hb_007943_180 Hb_021346_050--Hb_010868_040 Hb_002942_120 Hb_002942_120 Hb_021346_050--Hb_002942_120 Hb_004102_080 Hb_004102_080 Hb_021346_050--Hb_004102_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100437 0.211292 8.78575 3.88191 0.113061 0.233942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.488702 0.309348 0.722754 1.03972 4.78494

CAGE analysis