Hb_019613_030

Information

Type transcription factor
Description TF Family: SET
Location Contig19613: 30598-42153
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10830g
description POPTRDRAFT_719252; Polycomb group protein CURLY LEAF
nr
ID XP_012079259.1
description PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
swissprot
ID P93831
description Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana GN=CLF PE=1 SV=2
trembl
ID A0A067KAC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12419 PE=4 SV=1
Gene Ontology
ID GO:0031519
description histone-lysine n-methyltransferase clf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19676: 39226-40315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019613_030 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
2 Hb_002374_470 0.1133143689 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
3 Hb_000032_610 0.1133484393 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
4 Hb_000392_260 0.1191004804 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
5 Hb_003702_060 0.1219501487 - - PREDICTED: protein trichome birefringence-like 38 [Jatropha curcas]
6 Hb_000711_030 0.1225558299 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
7 Hb_029920_010 0.1255467227 - - pepsin A, putative [Ricinus communis]
8 Hb_006816_250 0.1269218075 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
9 Hb_000283_030 0.1278824296 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
10 Hb_005535_070 0.1295349984 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005237_020 0.1323235901 - - Kinesin heavy chain, putative [Ricinus communis]
12 Hb_041692_010 0.1360370405 - - annexin [Manihot esculenta]
13 Hb_004102_060 0.1377272372 - - JHL25H03.11 [Jatropha curcas]
14 Hb_002391_030 0.1377649116 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
15 Hb_137222_010 0.1380812543 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
16 Hb_007520_050 0.1392266904 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
17 Hb_174899_010 0.1404954642 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
18 Hb_000020_090 0.1423796845 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
19 Hb_011671_050 0.1431622931 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
20 Hb_000300_110 0.1433826329 - - hypothetical protein JCGZ_02651 [Jatropha curcas]

Gene co-expression network

sample Hb_019613_030 Hb_019613_030 Hb_002374_470 Hb_002374_470 Hb_019613_030--Hb_002374_470 Hb_000032_610 Hb_000032_610 Hb_019613_030--Hb_000032_610 Hb_000392_260 Hb_000392_260 Hb_019613_030--Hb_000392_260 Hb_003702_060 Hb_003702_060 Hb_019613_030--Hb_003702_060 Hb_000711_030 Hb_000711_030 Hb_019613_030--Hb_000711_030 Hb_029920_010 Hb_029920_010 Hb_019613_030--Hb_029920_010 Hb_001511_210 Hb_001511_210 Hb_002374_470--Hb_001511_210 Hb_011671_050 Hb_011671_050 Hb_002374_470--Hb_011671_050 Hb_027684_010 Hb_027684_010 Hb_002374_470--Hb_027684_010 Hb_002066_100 Hb_002066_100 Hb_002374_470--Hb_002066_100 Hb_002518_040 Hb_002518_040 Hb_002374_470--Hb_002518_040 Hb_000465_410 Hb_000465_410 Hb_000032_610--Hb_000465_410 Hb_005237_020 Hb_005237_020 Hb_000032_610--Hb_005237_020 Hb_002701_070 Hb_002701_070 Hb_000032_610--Hb_002701_070 Hb_001180_010 Hb_001180_010 Hb_000032_610--Hb_001180_010 Hb_048476_140 Hb_048476_140 Hb_000032_610--Hb_048476_140 Hb_001159_070 Hb_001159_070 Hb_000392_260--Hb_001159_070 Hb_000283_030 Hb_000283_030 Hb_000392_260--Hb_000283_030 Hb_000300_110 Hb_000300_110 Hb_000392_260--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_000392_260--Hb_000424_130 Hb_005535_070 Hb_005535_070 Hb_000392_260--Hb_005535_070 Hb_000392_260--Hb_000711_030 Hb_003702_060--Hb_029920_010 Hb_000000_390 Hb_000000_390 Hb_003702_060--Hb_000000_390 Hb_051663_010 Hb_051663_010 Hb_003702_060--Hb_051663_010 Hb_004204_060 Hb_004204_060 Hb_003702_060--Hb_004204_060 Hb_007850_020 Hb_007850_020 Hb_003702_060--Hb_007850_020 Hb_000922_200 Hb_000922_200 Hb_003702_060--Hb_000922_200 Hb_004650_050 Hb_004650_050 Hb_000711_030--Hb_004650_050 Hb_009838_070 Hb_009838_070 Hb_000711_030--Hb_009838_070 Hb_000711_030--Hb_001159_070 Hb_000950_020 Hb_000950_020 Hb_000711_030--Hb_000950_020 Hb_000327_260 Hb_000327_260 Hb_000711_030--Hb_000327_260 Hb_005000_110 Hb_005000_110 Hb_000711_030--Hb_005000_110 Hb_029920_010--Hb_000300_110 Hb_000152_350 Hb_000152_350 Hb_029920_010--Hb_000152_350 Hb_029920_010--Hb_000424_130 Hb_127263_010 Hb_127263_010 Hb_029920_010--Hb_127263_010 Hb_137222_010 Hb_137222_010 Hb_029920_010--Hb_137222_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0437918 0.0946348 5.58799 2.84774 0.0525384 0.0267285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137188 0.140346 0.0620077 0.727706 3.87332

CAGE analysis