Hb_029920_010

Information

Type -
Description -
Location Contig29920: 7120-8529
Sequence    

Annotation

kegg
ID rcu:RCOM_0308790
description pepsin A, putative
nr
ID XP_002534234.1
description pepsin A, putative [Ricinus communis]
swissprot
ID Q766C2
description Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1
trembl
ID B9T7L5
description Pepsin A, putative OS=Ricinus communis GN=RCOM_0308790 PE=4 SV=1
Gene Ontology
ID GO:0004190
description eukaryotic aspartyl protease family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029920_010 0.0 - - pepsin A, putative [Ricinus communis]
2 Hb_000300_110 0.0685410036 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
3 Hb_000152_350 0.0727803584 - - PREDICTED: enolase [Jatropha curcas]
4 Hb_003702_060 0.0772155785 - - PREDICTED: protein trichome birefringence-like 38 [Jatropha curcas]
5 Hb_000424_130 0.0793206307 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
6 Hb_127263_010 0.0843799232 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
7 Hb_137222_010 0.0925850695 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
8 Hb_004204_060 0.1013073843 transcription factor TF Family: NAC NAC transcription factor 058, partial [Jatropha curcas]
9 Hb_002078_330 0.1017303972 - - lipid binding protein, putative [Ricinus communis]
10 Hb_003371_080 0.1019120153 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
11 Hb_000020_090 0.1038734332 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
12 Hb_000239_050 0.1046651286 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
13 Hb_017434_040 0.1053477594 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
14 Hb_000000_390 0.1057062998 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
15 Hb_002704_060 0.1058256759 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
16 Hb_002391_030 0.1063967099 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
17 Hb_007545_070 0.1065559531 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
18 Hb_001491_070 0.1075403002 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
19 Hb_005018_010 0.1085672071 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_001005_140 0.1102403753 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_029920_010 Hb_029920_010 Hb_000300_110 Hb_000300_110 Hb_029920_010--Hb_000300_110 Hb_000152_350 Hb_000152_350 Hb_029920_010--Hb_000152_350 Hb_003702_060 Hb_003702_060 Hb_029920_010--Hb_003702_060 Hb_000424_130 Hb_000424_130 Hb_029920_010--Hb_000424_130 Hb_127263_010 Hb_127263_010 Hb_029920_010--Hb_127263_010 Hb_137222_010 Hb_137222_010 Hb_029920_010--Hb_137222_010 Hb_000300_110--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000300_110--Hb_000239_050 Hb_007545_070 Hb_007545_070 Hb_000300_110--Hb_007545_070 Hb_000866_060 Hb_000866_060 Hb_000300_110--Hb_000866_060 Hb_000300_110--Hb_000152_350 Hb_034235_010 Hb_034235_010 Hb_000152_350--Hb_034235_010 Hb_002078_330 Hb_002078_330 Hb_000152_350--Hb_002078_330 Hb_000152_350--Hb_000424_130 Hb_149644_030 Hb_149644_030 Hb_000152_350--Hb_149644_030 Hb_000000_390 Hb_000000_390 Hb_003702_060--Hb_000000_390 Hb_051663_010 Hb_051663_010 Hb_003702_060--Hb_051663_010 Hb_004204_060 Hb_004204_060 Hb_003702_060--Hb_004204_060 Hb_007850_020 Hb_007850_020 Hb_003702_060--Hb_007850_020 Hb_000922_200 Hb_000922_200 Hb_003702_060--Hb_000922_200 Hb_002835_310 Hb_002835_310 Hb_000424_130--Hb_002835_310 Hb_000424_130--Hb_007545_070 Hb_000424_130--Hb_000300_110 Hb_000424_130--Hb_127263_010 Hb_127263_010--Hb_000239_050 Hb_001409_080 Hb_001409_080 Hb_127263_010--Hb_001409_080 Hb_127263_010--Hb_000866_060 Hb_000816_240 Hb_000816_240 Hb_137222_010--Hb_000816_240 Hb_137222_010--Hb_000300_110 Hb_137222_010--Hb_000424_130 Hb_000327_260 Hb_000327_260 Hb_137222_010--Hb_000327_260 Hb_137222_010--Hb_127263_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.014716 0.925086 33.4693 19.4016 0 0.0149111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201277 0.369471 0.0989216 2.73076 34.359

CAGE analysis