Hb_121089_010

Information

Type -
Description -
Location Contig121089: 16061-23031
Sequence    

Annotation

kegg
ID rcu:RCOM_1692140
description hypothetical protein
nr
ID XP_012086710.1
description PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0H5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20445 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06489: 17295-20441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121089_010 0.0 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
2 Hb_000948_120 0.0948292051 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
3 Hb_003915_020 0.1057494309 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
4 Hb_000120_490 0.1077150798 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
5 Hb_003680_060 0.1179845386 - - hypothetical protein VITISV_022322 [Vitis vinifera]
6 Hb_004102_080 0.1203102439 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
7 Hb_001227_140 0.1227015455 - - PREDICTED: protein ROS1 [Jatropha curcas]
8 Hb_091433_050 0.1254562784 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
9 Hb_000684_200 0.1266248042 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_002636_030 0.1269106764 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
11 Hb_009393_130 0.1272453951 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
12 Hb_000345_400 0.1291932013 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001159_070 0.1298948903 - - DNA photolyase, putative [Ricinus communis]
14 Hb_003605_060 0.1306979277 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
15 Hb_003141_060 0.1346038687 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
16 Hb_000099_050 0.137920288 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000175_200 0.1389107025 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001623_380 0.1394420904 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
19 Hb_002485_050 0.1423524373 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
20 Hb_003119_130 0.1425767459 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]

Gene co-expression network

sample Hb_121089_010 Hb_121089_010 Hb_000948_120 Hb_000948_120 Hb_121089_010--Hb_000948_120 Hb_003915_020 Hb_003915_020 Hb_121089_010--Hb_003915_020 Hb_000120_490 Hb_000120_490 Hb_121089_010--Hb_000120_490 Hb_003680_060 Hb_003680_060 Hb_121089_010--Hb_003680_060 Hb_004102_080 Hb_004102_080 Hb_121089_010--Hb_004102_080 Hb_001227_140 Hb_001227_140 Hb_121089_010--Hb_001227_140 Hb_002636_030 Hb_002636_030 Hb_000948_120--Hb_002636_030 Hb_000948_120--Hb_001227_140 Hb_001159_070 Hb_001159_070 Hb_000948_120--Hb_001159_070 Hb_000948_120--Hb_003680_060 Hb_000140_460 Hb_000140_460 Hb_000948_120--Hb_000140_460 Hb_003915_020--Hb_001227_140 Hb_003915_020--Hb_004102_080 Hb_003141_060 Hb_003141_060 Hb_003915_020--Hb_003141_060 Hb_000940_030 Hb_000940_030 Hb_003915_020--Hb_000940_030 Hb_003915_020--Hb_000948_120 Hb_061126_010 Hb_061126_010 Hb_000120_490--Hb_061126_010 Hb_074548_010 Hb_074548_010 Hb_000120_490--Hb_074548_010 Hb_007462_020 Hb_007462_020 Hb_000120_490--Hb_007462_020 Hb_002010_030 Hb_002010_030 Hb_000120_490--Hb_002010_030 Hb_000697_020 Hb_000697_020 Hb_000120_490--Hb_000697_020 Hb_009393_130 Hb_009393_130 Hb_003680_060--Hb_009393_130 Hb_009838_070 Hb_009838_070 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_000711_030 Hb_000711_030 Hb_003680_060--Hb_000711_030 Hb_000175_200 Hb_000175_200 Hb_004102_080--Hb_000175_200 Hb_000926_040 Hb_000926_040 Hb_004102_080--Hb_000926_040 Hb_021346_050 Hb_021346_050 Hb_004102_080--Hb_021346_050 Hb_010868_040 Hb_010868_040 Hb_004102_080--Hb_010868_040 Hb_001227_140--Hb_003141_060 Hb_001227_140--Hb_000940_030 Hb_001365_030 Hb_001365_030 Hb_001227_140--Hb_001365_030 Hb_003055_070 Hb_003055_070 Hb_001227_140--Hb_003055_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0132721 0.956305 4.76838 1.72845 0.0407569 0.0291022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.316187 0.325326 0.0724422 0.632341 4.88354

CAGE analysis