Hb_091433_050

Information

Type -
Description -
Location Contig91433: 54069-60824
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09880g
description POPTRDRAFT_417124; hypothetical protein
nr
ID XP_012087901.1
description PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
swissprot
ID Q8S4F6
description Sulfoquinovosyl transferase SQD2 OS=Arabidopsis thaliana GN=SQD2 PE=1 SV=1
trembl
ID B9HCK5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s09880g PE=4 SV=2
Gene Ontology
ID GO:0009058
description sulfoquinovosyl transferase sqd2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62203: 58238-58392 , PASA_asmbl_62204: 54353-60806 , PASA_asmbl_62205: 54353-60806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091433_050 0.0 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
2 Hb_004650_050 0.0832835579 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
3 Hb_002636_030 0.0854883558 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
4 Hb_003680_060 0.1004166704 - - hypothetical protein VITISV_022322 [Vitis vinifera]
5 Hb_009393_130 0.1011381546 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
6 Hb_003605_060 0.1078642408 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
7 Hb_005210_010 0.110034914 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
8 Hb_004096_210 0.1118608005 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
9 Hb_000948_120 0.1128340494 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
10 Hb_000618_110 0.1137688418 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
11 Hb_000711_030 0.1180604219 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
12 Hb_009838_070 0.1182020479 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
13 Hb_000834_060 0.1184328302 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000856_280 0.1221231889 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
15 Hb_000684_200 0.122856051 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_121089_010 0.1254562784 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
17 Hb_009296_030 0.1272371704 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
18 Hb_000317_180 0.1294556704 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
19 Hb_022137_050 0.1294559487 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
20 Hb_001195_290 0.1307888797 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]

Gene co-expression network

sample Hb_091433_050 Hb_091433_050 Hb_004650_050 Hb_004650_050 Hb_091433_050--Hb_004650_050 Hb_002636_030 Hb_002636_030 Hb_091433_050--Hb_002636_030 Hb_003680_060 Hb_003680_060 Hb_091433_050--Hb_003680_060 Hb_009393_130 Hb_009393_130 Hb_091433_050--Hb_009393_130 Hb_003605_060 Hb_003605_060 Hb_091433_050--Hb_003605_060 Hb_005210_010 Hb_005210_010 Hb_091433_050--Hb_005210_010 Hb_009838_070 Hb_009838_070 Hb_004650_050--Hb_009838_070 Hb_000711_030 Hb_000711_030 Hb_004650_050--Hb_000711_030 Hb_004650_050--Hb_003680_060 Hb_004650_050--Hb_009393_130 Hb_004096_210 Hb_004096_210 Hb_004650_050--Hb_004096_210 Hb_002636_030--Hb_003605_060 Hb_000948_120 Hb_000948_120 Hb_002636_030--Hb_000948_120 Hb_000856_280 Hb_000856_280 Hb_002636_030--Hb_000856_280 Hb_074548_010 Hb_074548_010 Hb_002636_030--Hb_074548_010 Hb_010098_040 Hb_010098_040 Hb_002636_030--Hb_010098_040 Hb_003680_060--Hb_009393_130 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_003680_060--Hb_000711_030 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_009393_130--Hb_003605_060 Hb_009393_130--Hb_009838_070 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_002485_050 Hb_002485_050 Hb_003605_060--Hb_002485_050 Hb_003605_060--Hb_000856_280 Hb_003605_060--Hb_074548_010 Hb_003605_060--Hb_007803_040 Hb_005523_040 Hb_005523_040 Hb_005210_010--Hb_005523_040 Hb_000049_100 Hb_000049_100 Hb_005210_010--Hb_000049_100 Hb_000390_160 Hb_000390_160 Hb_005210_010--Hb_000390_160 Hb_001195_290 Hb_001195_290 Hb_005210_010--Hb_001195_290 Hb_005210_010--Hb_000856_280 Hb_006970_030 Hb_006970_030 Hb_005210_010--Hb_006970_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.361238 5.41084 29.7539 18.075 0.0923731 0.338438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87973 2.62747 1.7827 2.05568 45.1084

CAGE analysis