Hb_000649_330

Information

Type -
Description -
Location Contig649: 330319-332373
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11880g
description POPTRDRAFT_880495; hypothetical protein
nr
ID XP_002314794.2
description hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
swissprot
ID Q9ZU91
description Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2
trembl
ID B9HW33
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11880g PE=3 SV=2
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52509: 327886-332678 , PASA_asmbl_52510: 331676-332678
cDNA
(Sanger)
(ID:Location)		 023_E24.ab1: 331676-332676

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_330 0.0 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
2 Hb_001001_090 0.0587702847 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
3 Hb_000015_150 0.100922563 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
4 Hb_009078_020 0.1024329165 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
5 Hb_002849_050 0.104881287 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
6 Hb_011188_010 0.1065924856 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
7 Hb_005214_070 0.1074851067 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
8 Hb_002411_160 0.110085634 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
9 Hb_000477_070 0.111817181 - - histone h2a, putative [Ricinus communis]
10 Hb_027043_010 0.112235029 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
11 Hb_001117_080 0.1123085889 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
12 Hb_000968_060 0.1144649401 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
13 Hb_001663_130 0.1169821461 - - acyl-CoA thioesterase, putative [Ricinus communis]
14 Hb_004545_080 0.1178687724 - - protein with unknown function [Ricinus communis]
15 Hb_002259_220 0.1188976726 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
16 Hb_000098_180 0.1226300698 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
17 Hb_000086_180 0.1233877404 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
18 Hb_001439_210 0.1240530946 - - EXS family protein [Populus trichocarpa]
19 Hb_001677_100 0.1250453381 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
20 Hb_000032_410 0.1257436032 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]

Gene co-expression network

sample Hb_000649_330 Hb_000649_330 Hb_001001_090 Hb_001001_090 Hb_000649_330--Hb_001001_090 Hb_000015_150 Hb_000015_150 Hb_000649_330--Hb_000015_150 Hb_009078_020 Hb_009078_020 Hb_000649_330--Hb_009078_020 Hb_002849_050 Hb_002849_050 Hb_000649_330--Hb_002849_050 Hb_011188_010 Hb_011188_010 Hb_000649_330--Hb_011188_010 Hb_005214_070 Hb_005214_070 Hb_000649_330--Hb_005214_070 Hb_001001_090--Hb_005214_070 Hb_001001_090--Hb_009078_020 Hb_001001_090--Hb_011188_010 Hb_001001_090--Hb_000015_150 Hb_001663_130 Hb_001663_130 Hb_001001_090--Hb_001663_130 Hb_114943_020 Hb_114943_020 Hb_000015_150--Hb_114943_020 Hb_002463_050 Hb_002463_050 Hb_000015_150--Hb_002463_050 Hb_002411_160 Hb_002411_160 Hb_000015_150--Hb_002411_160 Hb_027043_010 Hb_027043_010 Hb_000015_150--Hb_027043_010 Hb_001059_060 Hb_001059_060 Hb_009078_020--Hb_001059_060 Hb_009078_020--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330 Hb_005741_040 Hb_005741_040 Hb_002849_050--Hb_005741_040 Hb_024758_020 Hb_024758_020 Hb_002849_050--Hb_024758_020 Hb_002849_050--Hb_011188_010 Hb_009296_020 Hb_009296_020 Hb_002849_050--Hb_009296_020 Hb_001279_020 Hb_001279_020 Hb_002849_050--Hb_001279_020 Hb_001414_010 Hb_001414_010 Hb_002849_050--Hb_001414_010 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_003894_060 Hb_003894_060 Hb_005214_070--Hb_003894_060 Hb_007290_070 Hb_007290_070 Hb_005214_070--Hb_007290_070 Hb_005214_070--Hb_001663_130 Hb_000748_110 Hb_000748_110 Hb_005214_070--Hb_000748_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.58736 2.7806 5.5361 3.7573 0.961881 1.06082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.415217 0.140002 0.526952 2.43876 2.93427

CAGE analysis