Hb_000748_110

Information

Type -
Description -
Location Contig748: 144025-150719
Sequence    

Annotation

kegg
ID rcu:RCOM_1194050
description Glycosyltransferase QUASIMODO1, putative
nr
ID XP_002520380.1
description Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
swissprot
ID Q8L4B0
description Probable galacturonosyltransferase 15 OS=Arabidopsis thaliana GN=GAUT15 PE=2 SV=1
trembl
ID B9S311
description Hexosyltransferase OS=Ricinus communis GN=RCOM_1194050 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56746: 144976-146502 , PASA_asmbl_56747: 144580-145376 , PASA_asmbl_56748: 144145-150670 , PASA_asmbl_56749: 147202-147598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000748_110 0.0 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
2 Hb_005214_070 0.1104168851 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
3 Hb_000834_050 0.1129902585 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
4 Hb_001408_020 0.1225849868 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
5 Hb_001863_340 0.1269349074 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
6 Hb_007290_070 0.1289023167 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
7 Hb_000077_210 0.1347501216 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
8 Hb_000035_490 0.1366002255 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
9 Hb_011381_070 0.1383465641 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
10 Hb_001001_090 0.1395392514 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
11 Hb_000366_050 0.1437628918 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
12 Hb_187005_010 0.1465982367 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
13 Hb_071072_010 0.1496382218 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_005539_100 0.1516230136 - - nucleoside transporter, putative [Ricinus communis]
15 Hb_001499_070 0.1529102944 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
16 Hb_003849_160 0.1549503452 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
17 Hb_002609_290 0.1553211017 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
18 Hb_001021_100 0.1557468454 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
19 Hb_003912_080 0.1560504466 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
20 Hb_025905_010 0.156240739 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]

Gene co-expression network

sample Hb_000748_110 Hb_000748_110 Hb_005214_070 Hb_005214_070 Hb_000748_110--Hb_005214_070 Hb_000834_050 Hb_000834_050 Hb_000748_110--Hb_000834_050 Hb_001408_020 Hb_001408_020 Hb_000748_110--Hb_001408_020 Hb_001863_340 Hb_001863_340 Hb_000748_110--Hb_001863_340 Hb_007290_070 Hb_007290_070 Hb_000748_110--Hb_007290_070 Hb_000077_210 Hb_000077_210 Hb_000748_110--Hb_000077_210 Hb_001001_090 Hb_001001_090 Hb_005214_070--Hb_001001_090 Hb_003894_060 Hb_003894_060 Hb_005214_070--Hb_003894_060 Hb_005214_070--Hb_007290_070 Hb_000649_330 Hb_000649_330 Hb_005214_070--Hb_000649_330 Hb_001663_130 Hb_001663_130 Hb_005214_070--Hb_001663_130 Hb_025905_010 Hb_025905_010 Hb_000834_050--Hb_025905_010 Hb_000834_050--Hb_001408_020 Hb_000834_050--Hb_005214_070 Hb_003849_120 Hb_003849_120 Hb_000834_050--Hb_003849_120 Hb_000834_050--Hb_007290_070 Hb_009078_020 Hb_009078_020 Hb_001408_020--Hb_009078_020 Hb_000732_230 Hb_000732_230 Hb_001408_020--Hb_000732_230 Hb_002809_160 Hb_002809_160 Hb_001408_020--Hb_002809_160 Hb_001408_020--Hb_007290_070 Hb_000227_320 Hb_000227_320 Hb_001408_020--Hb_000227_320 Hb_187005_010 Hb_187005_010 Hb_001408_020--Hb_187005_010 Hb_000035_490 Hb_000035_490 Hb_001863_340--Hb_000035_490 Hb_001021_100 Hb_001021_100 Hb_001863_340--Hb_001021_100 Hb_002030_110 Hb_002030_110 Hb_001863_340--Hb_002030_110 Hb_021409_110 Hb_021409_110 Hb_001863_340--Hb_021409_110 Hb_001250_040 Hb_001250_040 Hb_001863_340--Hb_001250_040 Hb_001499_070 Hb_001499_070 Hb_007290_070--Hb_001499_070 Hb_083078_010 Hb_083078_010 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_007290_070--Hb_187005_010 Hb_011671_280 Hb_011671_280 Hb_000077_210--Hb_011671_280 Hb_000077_210--Hb_001863_340 Hb_000077_210--Hb_001001_090 Hb_000366_050 Hb_000366_050 Hb_000077_210--Hb_000366_050 Hb_001386_020 Hb_001386_020 Hb_000077_210--Hb_001386_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.88501 28.5695 34.626 20.2442 9.94813 4.11373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.63025 0.480423 0.589587 10.002 26.1918

CAGE analysis