Hb_011671_280

Information

Type transcription factor
Description TF Family: ERF
Location Contig11671: 252725-253450
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15060g
description hypothetical protein
nr
ID XP_011022363.1
description PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
swissprot
ID Q9LY05
description Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1
trembl
ID A0A067JF46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26298 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05169: 252572-253211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_280 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
2 Hb_001414_050 0.1345103889 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
3 Hb_000077_210 0.1360128702 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
4 Hb_000015_150 0.1415882097 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
5 Hb_000654_050 0.1442630574 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
6 Hb_001999_320 0.1460014546 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
7 Hb_000196_010 0.1499201551 - - Patellin-5, putative [Ricinus communis]
8 Hb_001001_090 0.1499991013 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
9 Hb_000968_060 0.1521199327 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
10 Hb_002463_050 0.1524122187 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010315_100 0.1534075899 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
12 Hb_001863_340 0.1545184105 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
13 Hb_002900_150 0.1546357116 - - PREDICTED: syntaxin-81 [Jatropha curcas]
14 Hb_003912_080 0.158988538 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
15 Hb_000366_050 0.1593304658 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
16 Hb_002897_010 0.1598332734 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
17 Hb_001439_210 0.1607005332 - - EXS family protein [Populus trichocarpa]
18 Hb_000748_110 0.1610556456 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
19 Hb_003849_160 0.1615366757 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
20 Hb_003894_060 0.1634084484 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011671_280 Hb_011671_280 Hb_001414_050 Hb_001414_050 Hb_011671_280--Hb_001414_050 Hb_000077_210 Hb_000077_210 Hb_011671_280--Hb_000077_210 Hb_000015_150 Hb_000015_150 Hb_011671_280--Hb_000015_150 Hb_000654_050 Hb_000654_050 Hb_011671_280--Hb_000654_050 Hb_001999_320 Hb_001999_320 Hb_011671_280--Hb_001999_320 Hb_000196_010 Hb_000196_010 Hb_011671_280--Hb_000196_010 Hb_001776_200 Hb_001776_200 Hb_001414_050--Hb_001776_200 Hb_006935_040 Hb_006935_040 Hb_001414_050--Hb_006935_040 Hb_000008_390 Hb_000008_390 Hb_001414_050--Hb_000008_390 Hb_031821_010 Hb_031821_010 Hb_001414_050--Hb_031821_010 Hb_002965_080 Hb_002965_080 Hb_001414_050--Hb_002965_080 Hb_000748_110 Hb_000748_110 Hb_000077_210--Hb_000748_110 Hb_001863_340 Hb_001863_340 Hb_000077_210--Hb_001863_340 Hb_001001_090 Hb_001001_090 Hb_000077_210--Hb_001001_090 Hb_000366_050 Hb_000366_050 Hb_000077_210--Hb_000366_050 Hb_001386_020 Hb_001386_020 Hb_000077_210--Hb_001386_020 Hb_000015_150--Hb_001001_090 Hb_000649_330 Hb_000649_330 Hb_000015_150--Hb_000649_330 Hb_114943_020 Hb_114943_020 Hb_000015_150--Hb_114943_020 Hb_002463_050 Hb_002463_050 Hb_000015_150--Hb_002463_050 Hb_002411_160 Hb_002411_160 Hb_000015_150--Hb_002411_160 Hb_027043_010 Hb_027043_010 Hb_000015_150--Hb_027043_010 Hb_004678_030 Hb_004678_030 Hb_000654_050--Hb_004678_030 Hb_012308_050 Hb_012308_050 Hb_000654_050--Hb_012308_050 Hb_000654_050--Hb_002463_050 Hb_000320_270 Hb_000320_270 Hb_000654_050--Hb_000320_270 Hb_000061_310 Hb_000061_310 Hb_000654_050--Hb_000061_310 Hb_001054_040 Hb_001054_040 Hb_000654_050--Hb_001054_040 Hb_001059_060 Hb_001059_060 Hb_001999_320--Hb_001059_060 Hb_003849_160 Hb_003849_160 Hb_001999_320--Hb_003849_160 Hb_003912_080 Hb_003912_080 Hb_001999_320--Hb_003912_080 Hb_004052_110 Hb_004052_110 Hb_001999_320--Hb_004052_110 Hb_002259_220 Hb_002259_220 Hb_001999_320--Hb_002259_220 Hb_009078_020 Hb_009078_020 Hb_001999_320--Hb_009078_020 Hb_009745_010 Hb_009745_010 Hb_000196_010--Hb_009745_010 Hb_000363_180 Hb_000363_180 Hb_000196_010--Hb_000363_180 Hb_002909_100 Hb_002909_100 Hb_000196_010--Hb_002909_100 Hb_000950_040 Hb_000950_040 Hb_000196_010--Hb_000950_040 Hb_000732_230 Hb_000732_230 Hb_000196_010--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_000196_010--Hb_052117_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46041 7.69896 12.481 10.0733 1.51068 2.36067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.615425 0.241919 0 1.96557 6.12716

CAGE analysis