Hb_000077_210

Information

Type -
Description -
Location Contig77: 173440-176717
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13210g
description zinc finger family protein
nr
ID XP_012088296.1
description PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
swissprot
ID Q6R567
description E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1
trembl
ID A0A067JX84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25796 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rma1h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57592: 173588-175974 , PASA_asmbl_57593: 174284-174662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_210 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
2 Hb_000748_110 0.1347501216 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
3 Hb_011671_280 0.1360128702 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
4 Hb_001863_340 0.1439707467 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
5 Hb_001001_090 0.1443148415 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
6 Hb_000366_050 0.1447488052 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
7 Hb_001386_020 0.1457315768 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001408_020 0.1491989925 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
9 Hb_005214_070 0.1530434552 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
10 Hb_003849_160 0.1559647717 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
11 Hb_071072_010 0.1561042131 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_001776_200 0.1614888188 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
13 Hb_001247_210 0.1618731275 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001414_050 0.1627883374 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
15 Hb_001999_320 0.1648795764 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
16 Hb_002301_210 0.1661952006 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
17 Hb_003912_080 0.1667048051 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
18 Hb_005532_020 0.167688959 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
19 Hb_001250_040 0.1687136384 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
20 Hb_161549_010 0.1687214031 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000077_210 Hb_000077_210 Hb_000748_110 Hb_000748_110 Hb_000077_210--Hb_000748_110 Hb_011671_280 Hb_011671_280 Hb_000077_210--Hb_011671_280 Hb_001863_340 Hb_001863_340 Hb_000077_210--Hb_001863_340 Hb_001001_090 Hb_001001_090 Hb_000077_210--Hb_001001_090 Hb_000366_050 Hb_000366_050 Hb_000077_210--Hb_000366_050 Hb_001386_020 Hb_001386_020 Hb_000077_210--Hb_001386_020 Hb_005214_070 Hb_005214_070 Hb_000748_110--Hb_005214_070 Hb_000834_050 Hb_000834_050 Hb_000748_110--Hb_000834_050 Hb_001408_020 Hb_001408_020 Hb_000748_110--Hb_001408_020 Hb_000748_110--Hb_001863_340 Hb_007290_070 Hb_007290_070 Hb_000748_110--Hb_007290_070 Hb_001414_050 Hb_001414_050 Hb_011671_280--Hb_001414_050 Hb_000015_150 Hb_000015_150 Hb_011671_280--Hb_000015_150 Hb_000654_050 Hb_000654_050 Hb_011671_280--Hb_000654_050 Hb_001999_320 Hb_001999_320 Hb_011671_280--Hb_001999_320 Hb_000196_010 Hb_000196_010 Hb_011671_280--Hb_000196_010 Hb_000035_490 Hb_000035_490 Hb_001863_340--Hb_000035_490 Hb_001021_100 Hb_001021_100 Hb_001863_340--Hb_001021_100 Hb_002030_110 Hb_002030_110 Hb_001863_340--Hb_002030_110 Hb_021409_110 Hb_021409_110 Hb_001863_340--Hb_021409_110 Hb_001250_040 Hb_001250_040 Hb_001863_340--Hb_001250_040 Hb_000649_330 Hb_000649_330 Hb_001001_090--Hb_000649_330 Hb_001001_090--Hb_005214_070 Hb_009078_020 Hb_009078_020 Hb_001001_090--Hb_009078_020 Hb_011188_010 Hb_011188_010 Hb_001001_090--Hb_011188_010 Hb_001001_090--Hb_000015_150 Hb_001663_130 Hb_001663_130 Hb_001001_090--Hb_001663_130 Hb_011381_070 Hb_011381_070 Hb_000366_050--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_000366_050--Hb_001158_120 Hb_002609_290 Hb_002609_290 Hb_000366_050--Hb_002609_290 Hb_005539_100 Hb_005539_100 Hb_000366_050--Hb_005539_100 Hb_000329_790 Hb_000329_790 Hb_000366_050--Hb_000329_790 Hb_001294_040 Hb_001294_040 Hb_000366_050--Hb_001294_040 Hb_000086_640 Hb_000086_640 Hb_001386_020--Hb_000086_640 Hb_000753_140 Hb_000753_140 Hb_001386_020--Hb_000753_140 Hb_132840_020 Hb_132840_020 Hb_001386_020--Hb_132840_020 Hb_001386_020--Hb_000035_490 Hb_002383_050 Hb_002383_050 Hb_001386_020--Hb_002383_050 Hb_001386_020--Hb_011381_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12573 11.8366 14.468 7.99503 2.89165 4.14602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04596 0.470089 0 2.74023 9.22528

CAGE analysis