Hb_000834_050

Information

Type -
Description -
Location Contig834: 34693-39430
Sequence    

Annotation

kegg
ID rcu:RCOM_1052700
description ATP binding protein, putative (EC:2.7.11.30)
nr
ID XP_011043470.1
description PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID A0A0B0P0U9
description Proline-rich receptor-like protein kinase PERK1 OS=Gossypium arboreum GN=F383_09126 PE=4 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59869: 34855-38968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_050 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
2 Hb_000748_110 0.1129902585 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
3 Hb_025905_010 0.1555690564 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
4 Hb_001408_020 0.1559284407 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
5 Hb_005214_070 0.1573598025 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
6 Hb_003849_120 0.1610736899 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
7 Hb_007290_070 0.1639321102 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
8 Hb_001001_090 0.1642711128 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
9 Hb_005532_020 0.1646075713 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
10 Hb_050847_040 0.166439282 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
11 Hb_004204_210 0.1686973137 - - PREDICTED: heparanase-like protein 1 [Jatropha curcas]
12 Hb_000077_210 0.169929681 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
13 Hb_012353_040 0.1740469948 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_000649_330 0.1743906312 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
15 Hb_086639_100 0.1762237132 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105646787 [Jatropha curcas]
16 Hb_002447_050 0.1803980041 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_003849_160 0.1812527978 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
18 Hb_003470_070 0.1822805334 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
19 Hb_000968_060 0.1824807565 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
20 Hb_001863_340 0.1848687401 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]

Gene co-expression network

sample Hb_000834_050 Hb_000834_050 Hb_000748_110 Hb_000748_110 Hb_000834_050--Hb_000748_110 Hb_025905_010 Hb_025905_010 Hb_000834_050--Hb_025905_010 Hb_001408_020 Hb_001408_020 Hb_000834_050--Hb_001408_020 Hb_005214_070 Hb_005214_070 Hb_000834_050--Hb_005214_070 Hb_003849_120 Hb_003849_120 Hb_000834_050--Hb_003849_120 Hb_007290_070 Hb_007290_070 Hb_000834_050--Hb_007290_070 Hb_000748_110--Hb_005214_070 Hb_000748_110--Hb_001408_020 Hb_001863_340 Hb_001863_340 Hb_000748_110--Hb_001863_340 Hb_000748_110--Hb_007290_070 Hb_000077_210 Hb_000077_210 Hb_000748_110--Hb_000077_210 Hb_025905_010--Hb_001863_340 Hb_092062_010 Hb_092062_010 Hb_025905_010--Hb_092062_010 Hb_001414_050 Hb_001414_050 Hb_025905_010--Hb_001414_050 Hb_003090_150 Hb_003090_150 Hb_025905_010--Hb_003090_150 Hb_025905_010--Hb_000748_110 Hb_009078_020 Hb_009078_020 Hb_001408_020--Hb_009078_020 Hb_000732_230 Hb_000732_230 Hb_001408_020--Hb_000732_230 Hb_002809_160 Hb_002809_160 Hb_001408_020--Hb_002809_160 Hb_001408_020--Hb_007290_070 Hb_000227_320 Hb_000227_320 Hb_001408_020--Hb_000227_320 Hb_187005_010 Hb_187005_010 Hb_001408_020--Hb_187005_010 Hb_001001_090 Hb_001001_090 Hb_005214_070--Hb_001001_090 Hb_003894_060 Hb_003894_060 Hb_005214_070--Hb_003894_060 Hb_005214_070--Hb_007290_070 Hb_000649_330 Hb_000649_330 Hb_005214_070--Hb_000649_330 Hb_001663_130 Hb_001663_130 Hb_005214_070--Hb_001663_130 Hb_000012_400 Hb_000012_400 Hb_003849_120--Hb_000012_400 Hb_000562_100 Hb_000562_100 Hb_003849_120--Hb_000562_100 Hb_000997_070 Hb_000997_070 Hb_003849_120--Hb_000997_070 Hb_002217_080 Hb_002217_080 Hb_003849_120--Hb_002217_080 Hb_000968_060 Hb_000968_060 Hb_003849_120--Hb_000968_060 Hb_003849_120--Hb_009078_020 Hb_001499_070 Hb_001499_070 Hb_007290_070--Hb_001499_070 Hb_083078_010 Hb_083078_010 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_007290_070--Hb_187005_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.964077 10.839 16.6588 11.0878 8.75411 2.62061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.363821 0.301347 0.258102 5.9687 11.8614

CAGE analysis