Hb_092062_010

Information

Type -
Description -
Location Contig92062: 96-2482
Sequence    

Annotation

kegg
ID rcu:RCOM_0306980
description Ran GTPase binding protein, putative
nr
ID KDP24565.1
description hypothetical protein JCGZ_25129 [Jatropha curcas]
swissprot
ID Q4U2R1
description E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
trembl
ID A0A067JX35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25129 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092062_010 0.0 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
2 Hb_025905_010 0.1356803477 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
3 Hb_001758_130 0.1463108006 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
4 Hb_001414_050 0.2081450399 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
5 Hb_031403_030 0.2193844089 - - -
6 Hb_021409_110 0.2225558254 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_003667_020 0.2227451952 - - conserved hypothetical protein 16 [Hevea brasiliensis]
8 Hb_001863_340 0.2246385919 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
9 Hb_003090_150 0.2267166314 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
10 Hb_002030_110 0.2291995568 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
11 Hb_002014_050 0.229471978 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
12 Hb_006935_040 0.2296193561 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
13 Hb_005725_280 0.2316818021 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
14 Hb_000336_180 0.2317305919 - - conserved hypothetical protein [Ricinus communis]
15 Hb_031821_010 0.2349759945 - - ccd1, putative [Ricinus communis]
16 Hb_004324_210 0.2352260776 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
17 Hb_000030_020 0.2362132792 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
18 Hb_000165_090 0.2390611592 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
19 Hb_001102_090 0.2419047084 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
20 Hb_001294_050 0.2427569041 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]

Gene co-expression network

sample Hb_092062_010 Hb_092062_010 Hb_025905_010 Hb_025905_010 Hb_092062_010--Hb_025905_010 Hb_001758_130 Hb_001758_130 Hb_092062_010--Hb_001758_130 Hb_001414_050 Hb_001414_050 Hb_092062_010--Hb_001414_050 Hb_031403_030 Hb_031403_030 Hb_092062_010--Hb_031403_030 Hb_021409_110 Hb_021409_110 Hb_092062_010--Hb_021409_110 Hb_003667_020 Hb_003667_020 Hb_092062_010--Hb_003667_020 Hb_001863_340 Hb_001863_340 Hb_025905_010--Hb_001863_340 Hb_025905_010--Hb_001414_050 Hb_003090_150 Hb_003090_150 Hb_025905_010--Hb_003090_150 Hb_000834_050 Hb_000834_050 Hb_025905_010--Hb_000834_050 Hb_000748_110 Hb_000748_110 Hb_025905_010--Hb_000748_110 Hb_031821_010 Hb_031821_010 Hb_001758_130--Hb_031821_010 Hb_001758_130--Hb_025905_010 Hb_001758_130--Hb_003090_150 Hb_000671_060 Hb_000671_060 Hb_001758_130--Hb_000671_060 Hb_001758_130--Hb_001414_050 Hb_001776_200 Hb_001776_200 Hb_001414_050--Hb_001776_200 Hb_006935_040 Hb_006935_040 Hb_001414_050--Hb_006935_040 Hb_000008_390 Hb_000008_390 Hb_001414_050--Hb_000008_390 Hb_011671_280 Hb_011671_280 Hb_001414_050--Hb_011671_280 Hb_001414_050--Hb_031821_010 Hb_002965_080 Hb_002965_080 Hb_001414_050--Hb_002965_080 Hb_031403_030--Hb_025905_010 Hb_000197_110 Hb_000197_110 Hb_031403_030--Hb_000197_110 Hb_031403_030--Hb_001758_130 Hb_133605_010 Hb_133605_010 Hb_031403_030--Hb_133605_010 Hb_000914_050 Hb_000914_050 Hb_031403_030--Hb_000914_050 Hb_007224_010 Hb_007224_010 Hb_021409_110--Hb_007224_010 Hb_089305_010 Hb_089305_010 Hb_021409_110--Hb_089305_010 Hb_001621_050 Hb_001621_050 Hb_021409_110--Hb_001621_050 Hb_000110_260 Hb_000110_260 Hb_021409_110--Hb_000110_260 Hb_021409_110--Hb_001863_340 Hb_005725_280 Hb_005725_280 Hb_021409_110--Hb_005725_280 Hb_001862_030 Hb_001862_030 Hb_003667_020--Hb_001862_030 Hb_001541_190 Hb_001541_190 Hb_003667_020--Hb_001541_190 Hb_001862_050 Hb_001862_050 Hb_003667_020--Hb_001862_050 Hb_000165_090 Hb_000165_090 Hb_003667_020--Hb_000165_090 Hb_000069_300 Hb_000069_300 Hb_003667_020--Hb_000069_300 Hb_000260_610 Hb_000260_610 Hb_003667_020--Hb_000260_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.728621 19.8719 30.6479 21.968 12.0822 0.339365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92426 1.68106 0.403882 0.227142 10.4171

CAGE analysis