Hb_025905_010

Information

Type -
Description -
Location Contig25905: 578-6606
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00320g
description hypothetical protein
nr
ID XP_012066903.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A067K1U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16973 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26885: 2393-4022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025905_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
2 Hb_001863_340 0.1295145494 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
3 Hb_092062_010 0.1356803477 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
4 Hb_001414_050 0.1449256926 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
5 Hb_003090_150 0.1474148843 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
6 Hb_000834_050 0.1555690564 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
7 Hb_000748_110 0.156240739 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
8 Hb_000035_490 0.1699171786 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
9 Hb_001758_130 0.1703636846 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
10 Hb_004324_210 0.1730757134 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
11 Hb_002030_110 0.1739595616 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
12 Hb_006935_040 0.1749271618 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
13 Hb_001102_090 0.1793393409 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
14 Hb_001776_200 0.1829237298 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
15 Hb_001571_030 0.1858823432 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
16 Hb_001250_040 0.1860946255 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
17 Hb_000336_180 0.1862086558 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000077_210 0.1893640998 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
19 Hb_002997_110 0.1901246166 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
20 Hb_001021_100 0.1907153527 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_025905_010 Hb_025905_010 Hb_001863_340 Hb_001863_340 Hb_025905_010--Hb_001863_340 Hb_092062_010 Hb_092062_010 Hb_025905_010--Hb_092062_010 Hb_001414_050 Hb_001414_050 Hb_025905_010--Hb_001414_050 Hb_003090_150 Hb_003090_150 Hb_025905_010--Hb_003090_150 Hb_000834_050 Hb_000834_050 Hb_025905_010--Hb_000834_050 Hb_000748_110 Hb_000748_110 Hb_025905_010--Hb_000748_110 Hb_000035_490 Hb_000035_490 Hb_001863_340--Hb_000035_490 Hb_001021_100 Hb_001021_100 Hb_001863_340--Hb_001021_100 Hb_002030_110 Hb_002030_110 Hb_001863_340--Hb_002030_110 Hb_001863_340--Hb_000748_110 Hb_021409_110 Hb_021409_110 Hb_001863_340--Hb_021409_110 Hb_001250_040 Hb_001250_040 Hb_001863_340--Hb_001250_040 Hb_001758_130 Hb_001758_130 Hb_092062_010--Hb_001758_130 Hb_092062_010--Hb_001414_050 Hb_031403_030 Hb_031403_030 Hb_092062_010--Hb_031403_030 Hb_092062_010--Hb_021409_110 Hb_003667_020 Hb_003667_020 Hb_092062_010--Hb_003667_020 Hb_001776_200 Hb_001776_200 Hb_001414_050--Hb_001776_200 Hb_006935_040 Hb_006935_040 Hb_001414_050--Hb_006935_040 Hb_000008_390 Hb_000008_390 Hb_001414_050--Hb_000008_390 Hb_011671_280 Hb_011671_280 Hb_001414_050--Hb_011671_280 Hb_031821_010 Hb_031821_010 Hb_001414_050--Hb_031821_010 Hb_002965_080 Hb_002965_080 Hb_001414_050--Hb_002965_080 Hb_000671_060 Hb_000671_060 Hb_003090_150--Hb_000671_060 Hb_001571_030 Hb_001571_030 Hb_003090_150--Hb_001571_030 Hb_003090_150--Hb_002030_110 Hb_001894_160 Hb_001894_160 Hb_003090_150--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_003090_150--Hb_011671_110 Hb_033930_010 Hb_033930_010 Hb_003090_150--Hb_033930_010 Hb_000834_050--Hb_000748_110 Hb_001408_020 Hb_001408_020 Hb_000834_050--Hb_001408_020 Hb_005214_070 Hb_005214_070 Hb_000834_050--Hb_005214_070 Hb_003849_120 Hb_003849_120 Hb_000834_050--Hb_003849_120 Hb_007290_070 Hb_007290_070 Hb_000834_050--Hb_007290_070 Hb_000748_110--Hb_005214_070 Hb_000748_110--Hb_001408_020 Hb_000748_110--Hb_007290_070 Hb_000077_210 Hb_000077_210 Hb_000748_110--Hb_000077_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.275294 2.8516 4.29716 2.63193 1.72977 0.252981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109187 0.171834 0.109131 0.329874 2.03806

CAGE analysis