Hb_031403_030

Information

Type -
Description -
Location Contig31403: 48847-51168
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33190: 47149-48714 , PASA_asmbl_33191: 48742-49234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031403_030 0.0 - - -
2 Hb_025905_010 0.2148667414 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
3 Hb_092062_010 0.2193844089 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
4 Hb_000197_110 0.2287469543 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001758_130 0.234049647 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
6 Hb_133605_010 0.2396403245 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_000914_050 0.2431276474 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
8 Hb_001414_050 0.2456156953 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
9 Hb_018133_100 0.2458877945 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000200_070 0.2496435262 - - PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
11 Hb_154114_030 0.2519151501 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_000390_020 0.2546279332 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
13 Hb_003605_120 0.2558035762 - - hypothetical protein POPTR_0013s12060g [Populus trichocarpa]
14 Hb_001328_050 0.256725753 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
15 Hb_000094_190 0.2579908079 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
16 Hb_002374_550 0.2586080483 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
17 Hb_006286_010 0.2586469732 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
18 Hb_002026_020 0.2615683732 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
19 Hb_003086_160 0.2631005238 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
20 Hb_000056_030 0.2635125754 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_031403_030 Hb_031403_030 Hb_025905_010 Hb_025905_010 Hb_031403_030--Hb_025905_010 Hb_092062_010 Hb_092062_010 Hb_031403_030--Hb_092062_010 Hb_000197_110 Hb_000197_110 Hb_031403_030--Hb_000197_110 Hb_001758_130 Hb_001758_130 Hb_031403_030--Hb_001758_130 Hb_133605_010 Hb_133605_010 Hb_031403_030--Hb_133605_010 Hb_000914_050 Hb_000914_050 Hb_031403_030--Hb_000914_050 Hb_001863_340 Hb_001863_340 Hb_025905_010--Hb_001863_340 Hb_025905_010--Hb_092062_010 Hb_001414_050 Hb_001414_050 Hb_025905_010--Hb_001414_050 Hb_003090_150 Hb_003090_150 Hb_025905_010--Hb_003090_150 Hb_000834_050 Hb_000834_050 Hb_025905_010--Hb_000834_050 Hb_000748_110 Hb_000748_110 Hb_025905_010--Hb_000748_110 Hb_092062_010--Hb_001758_130 Hb_092062_010--Hb_001414_050 Hb_021409_110 Hb_021409_110 Hb_092062_010--Hb_021409_110 Hb_003667_020 Hb_003667_020 Hb_092062_010--Hb_003667_020 Hb_003449_060 Hb_003449_060 Hb_000197_110--Hb_003449_060 Hb_001367_010 Hb_001367_010 Hb_000197_110--Hb_001367_010 Hb_009249_020 Hb_009249_020 Hb_000197_110--Hb_009249_020 Hb_000200_070 Hb_000200_070 Hb_000197_110--Hb_000200_070 Hb_004374_130 Hb_004374_130 Hb_000197_110--Hb_004374_130 Hb_031821_010 Hb_031821_010 Hb_001758_130--Hb_031821_010 Hb_001758_130--Hb_025905_010 Hb_001758_130--Hb_003090_150 Hb_000671_060 Hb_000671_060 Hb_001758_130--Hb_000671_060 Hb_001758_130--Hb_001414_050 Hb_000406_010 Hb_000406_010 Hb_133605_010--Hb_000406_010 Hb_188411_010 Hb_188411_010 Hb_133605_010--Hb_188411_010 Hb_003740_010 Hb_003740_010 Hb_133605_010--Hb_003740_010 Hb_002570_010 Hb_002570_010 Hb_133605_010--Hb_002570_010 Hb_161023_010 Hb_161023_010 Hb_133605_010--Hb_161023_010 Hb_003102_030 Hb_003102_030 Hb_000914_050--Hb_003102_030 Hb_007044_160 Hb_007044_160 Hb_000914_050--Hb_007044_160 Hb_002026_020 Hb_002026_020 Hb_000914_050--Hb_002026_020 Hb_002374_550 Hb_002374_550 Hb_000914_050--Hb_002374_550 Hb_000094_190 Hb_000094_190 Hb_000914_050--Hb_000094_190 Hb_005941_030 Hb_005941_030 Hb_000914_050--Hb_005941_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.213442 0.841219 1.7541 1.75766 1.03602 0.20941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.5665

CAGE analysis