Hb_003102_030

Information

Type -
Description -
Location Contig3102: 17248-18111
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14690g
description POPTRDRAFT_767182; hypothetical protein
nr
ID XP_012085153.1
description PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15136 PE=4 SV=1
Gene Ontology
ID GO:0005524
description sulfate thiosulfate import atp-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32833: 17366-18170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003102_030 0.0 - - PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
2 Hb_007044_160 0.121540783 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
3 Hb_005941_030 0.1380239883 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
4 Hb_000914_050 0.1415385184 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
5 Hb_000071_160 0.1443037743 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
6 Hb_000011_070 0.1622080098 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
7 Hb_002374_550 0.1657933686 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
8 Hb_000599_330 0.1729590245 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
9 Hb_000042_060 0.1814236766 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
10 Hb_001595_040 0.1847153271 - - Root phototropism protein, putative [Ricinus communis]
11 Hb_011671_280 0.1863991848 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
12 Hb_006422_020 0.1868258988 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
13 Hb_003029_060 0.1937134901 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
14 Hb_002026_020 0.2005159425 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
15 Hb_004631_170 0.2011159716 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007483_120 0.2014230704 - - 60S ribosomal protein L32A [Hevea brasiliensis]
17 Hb_011828_010 0.2015415197 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
18 Hb_002488_010 0.2017704606 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
19 Hb_000963_050 0.2051169167 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
20 Hb_009838_020 0.2059427148 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003102_030 Hb_003102_030 Hb_007044_160 Hb_007044_160 Hb_003102_030--Hb_007044_160 Hb_005941_030 Hb_005941_030 Hb_003102_030--Hb_005941_030 Hb_000914_050 Hb_000914_050 Hb_003102_030--Hb_000914_050 Hb_000071_160 Hb_000071_160 Hb_003102_030--Hb_000071_160 Hb_000011_070 Hb_000011_070 Hb_003102_030--Hb_000011_070 Hb_002374_550 Hb_002374_550 Hb_003102_030--Hb_002374_550 Hb_007044_160--Hb_000914_050 Hb_007044_160--Hb_005941_030 Hb_007044_160--Hb_002374_550 Hb_007044_160--Hb_000071_160 Hb_001711_080 Hb_001711_080 Hb_007044_160--Hb_001711_080 Hb_005941_030--Hb_000071_160 Hb_014497_040 Hb_014497_040 Hb_005941_030--Hb_014497_040 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_003029_060 Hb_003029_060 Hb_005941_030--Hb_003029_060 Hb_014361_090 Hb_014361_090 Hb_005941_030--Hb_014361_090 Hb_009838_020 Hb_009838_020 Hb_005941_030--Hb_009838_020 Hb_002026_020 Hb_002026_020 Hb_000914_050--Hb_002026_020 Hb_000914_050--Hb_002374_550 Hb_000094_190 Hb_000094_190 Hb_000914_050--Hb_000094_190 Hb_000914_050--Hb_005941_030 Hb_000071_160--Hb_014361_090 Hb_000071_160--Hb_011828_010 Hb_000271_220 Hb_000271_220 Hb_000071_160--Hb_000271_220 Hb_004899_340 Hb_004899_340 Hb_000071_160--Hb_004899_340 Hb_003929_190 Hb_003929_190 Hb_000071_160--Hb_003929_190 Hb_000349_200 Hb_000349_200 Hb_000011_070--Hb_000349_200 Hb_000011_070--Hb_000271_220 Hb_000603_020 Hb_000603_020 Hb_000011_070--Hb_000603_020 Hb_000011_070--Hb_011828_010 Hb_003929_230 Hb_003929_230 Hb_000011_070--Hb_003929_230 Hb_000011_070--Hb_000071_160 Hb_002374_550--Hb_005941_030 Hb_000042_060 Hb_000042_060 Hb_002374_550--Hb_000042_060 Hb_002374_550--Hb_014361_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4987 3.09036 4.35948 8.1301 0.933603 2.07245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0479768 0 0.406783 4.46239

CAGE analysis