Hb_000094_190

Information

Type -
Description -
Location Contig94: 170466-173136
Sequence    

Annotation

kegg
ID rcu:RCOM_1594120
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012071830.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
swissprot
ID Q9M069
description Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2
trembl
ID A0A067L315
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04419 PE=3 SV=1
Gene Ontology
ID GO:0031225
description glucan endo- -beta-glucosidase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63102: 170712-172976
cDNA
(Sanger)
(ID:Location)		 028_D02.ab1: 170712-171710 , 046_G12.ab1: 170712-171971 , 048_I05.ab1: 170712-171968

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_190 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
2 Hb_012762_060 0.158046222 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
3 Hb_001754_060 0.1634763874 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
4 Hb_002026_020 0.1668645623 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
5 Hb_000914_050 0.1705898631 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
6 Hb_000844_030 0.1744051965 - - ent-kaurene oxidase, putative [Ricinus communis]
7 Hb_002374_550 0.1747100227 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
8 Hb_030312_010 0.1762938275 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000300_230 0.1771818001 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
10 Hb_002675_090 0.1782100012 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000732_240 0.1785605988 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
12 Hb_000797_060 0.1789469583 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
13 Hb_003090_160 0.184611113 - - -
14 Hb_000424_030 0.1879487762 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006829_070 0.189807735 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
16 Hb_186247_010 0.1899120265 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
17 Hb_002272_200 0.1907241918 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
18 Hb_004631_170 0.1918152157 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010812_110 0.1924933087 - - putative plant disease resistance family protein [Populus trichocarpa]
20 Hb_001328_050 0.195430792 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]

Gene co-expression network

sample Hb_000094_190 Hb_000094_190 Hb_012762_060 Hb_012762_060 Hb_000094_190--Hb_012762_060 Hb_001754_060 Hb_001754_060 Hb_000094_190--Hb_001754_060 Hb_002026_020 Hb_002026_020 Hb_000094_190--Hb_002026_020 Hb_000914_050 Hb_000914_050 Hb_000094_190--Hb_000914_050 Hb_000844_030 Hb_000844_030 Hb_000094_190--Hb_000844_030 Hb_002374_550 Hb_002374_550 Hb_000094_190--Hb_002374_550 Hb_003680_030 Hb_003680_030 Hb_012762_060--Hb_003680_030 Hb_002217_320 Hb_002217_320 Hb_012762_060--Hb_002217_320 Hb_006829_070 Hb_006829_070 Hb_012762_060--Hb_006829_070 Hb_002488_010 Hb_002488_010 Hb_012762_060--Hb_002488_010 Hb_012762_060--Hb_002026_020 Hb_000134_120 Hb_000134_120 Hb_012762_060--Hb_000134_120 Hb_002289_150 Hb_002289_150 Hb_001754_060--Hb_002289_150 Hb_017159_010 Hb_017159_010 Hb_001754_060--Hb_017159_010 Hb_003090_160 Hb_003090_160 Hb_001754_060--Hb_003090_160 Hb_000203_270 Hb_000203_270 Hb_001754_060--Hb_000203_270 Hb_000797_060 Hb_000797_060 Hb_001754_060--Hb_000797_060 Hb_000523_030 Hb_000523_030 Hb_001754_060--Hb_000523_030 Hb_001328_050 Hb_001328_050 Hb_002026_020--Hb_001328_050 Hb_002026_020--Hb_006829_070 Hb_000030_020 Hb_000030_020 Hb_002026_020--Hb_000030_020 Hb_002900_150 Hb_002900_150 Hb_002026_020--Hb_002900_150 Hb_002026_020--Hb_003680_030 Hb_003102_030 Hb_003102_030 Hb_000914_050--Hb_003102_030 Hb_007044_160 Hb_007044_160 Hb_000914_050--Hb_007044_160 Hb_000914_050--Hb_002026_020 Hb_000914_050--Hb_002374_550 Hb_005941_030 Hb_005941_030 Hb_000914_050--Hb_005941_030 Hb_010812_110 Hb_010812_110 Hb_000844_030--Hb_010812_110 Hb_000330_020 Hb_000330_020 Hb_000844_030--Hb_000330_020 Hb_004738_030 Hb_004738_030 Hb_000844_030--Hb_004738_030 Hb_001474_040 Hb_001474_040 Hb_000844_030--Hb_001474_040 Hb_000844_030--Hb_012762_060 Hb_002374_550--Hb_005941_030 Hb_000042_060 Hb_000042_060 Hb_002374_550--Hb_000042_060 Hb_002374_550--Hb_007044_160 Hb_002374_550--Hb_003102_030 Hb_014361_090 Hb_014361_090 Hb_002374_550--Hb_014361_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41899 20.6727 16.4257 47.9605 12.6252 4.49378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01998 2.1857 1.42609 3.44316 9.13939

CAGE analysis