Hb_007044_160

Information

Type transcription factor
Description TF Family: TCP
Location Contig7044: 125453-126843
Sequence    

Annotation

kegg
ID rcu:RCOM_1569020
description hypothetical protein
nr
ID XP_011021200.1
description PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
swissprot
ID Q9FYG7
description Transcription factor TCP1 OS=Arabidopsis thaliana GN=TCP1 PE=2 SV=1
trembl
ID B9S5D2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1569020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_160 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
2 Hb_003102_030 0.121540783 - - PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
3 Hb_000914_050 0.1502851866 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
4 Hb_005941_030 0.1518078644 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
5 Hb_002374_550 0.1649123007 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
6 Hb_000071_160 0.1751609375 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
7 Hb_001711_080 0.1768570583 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
8 Hb_000599_330 0.1772684598 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
9 Hb_000482_120 0.1824983961 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
10 Hb_030565_050 0.1859102315 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
11 Hb_025645_020 0.1887050434 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
12 Hb_000327_320 0.1888751554 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
13 Hb_000011_070 0.1927178611 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
14 Hb_010337_040 0.1954442316 - - -
15 Hb_002686_130 0.2005560934 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105650401 [Jatropha curcas]
16 Hb_000330_020 0.2016027758 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
17 Hb_009249_020 0.2060877132 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
18 Hb_004631_170 0.2081716261 - - conserved hypothetical protein [Ricinus communis]
19 Hb_014361_090 0.2096114025 - - acyl-CoA binding protein 3A [Vernicia fordii]
20 Hb_150440_010 0.2099888352 - - -

Gene co-expression network

sample Hb_007044_160 Hb_007044_160 Hb_003102_030 Hb_003102_030 Hb_007044_160--Hb_003102_030 Hb_000914_050 Hb_000914_050 Hb_007044_160--Hb_000914_050 Hb_005941_030 Hb_005941_030 Hb_007044_160--Hb_005941_030 Hb_002374_550 Hb_002374_550 Hb_007044_160--Hb_002374_550 Hb_000071_160 Hb_000071_160 Hb_007044_160--Hb_000071_160 Hb_001711_080 Hb_001711_080 Hb_007044_160--Hb_001711_080 Hb_003102_030--Hb_005941_030 Hb_003102_030--Hb_000914_050 Hb_003102_030--Hb_000071_160 Hb_000011_070 Hb_000011_070 Hb_003102_030--Hb_000011_070 Hb_003102_030--Hb_002374_550 Hb_002026_020 Hb_002026_020 Hb_000914_050--Hb_002026_020 Hb_000914_050--Hb_002374_550 Hb_000094_190 Hb_000094_190 Hb_000914_050--Hb_000094_190 Hb_000914_050--Hb_005941_030 Hb_005941_030--Hb_000071_160 Hb_014497_040 Hb_014497_040 Hb_005941_030--Hb_014497_040 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_003029_060 Hb_003029_060 Hb_005941_030--Hb_003029_060 Hb_014361_090 Hb_014361_090 Hb_005941_030--Hb_014361_090 Hb_009838_020 Hb_009838_020 Hb_005941_030--Hb_009838_020 Hb_002374_550--Hb_005941_030 Hb_000042_060 Hb_000042_060 Hb_002374_550--Hb_000042_060 Hb_002374_550--Hb_014361_090 Hb_000071_160--Hb_014361_090 Hb_000071_160--Hb_011828_010 Hb_000271_220 Hb_000271_220 Hb_000071_160--Hb_000271_220 Hb_004899_340 Hb_004899_340 Hb_000071_160--Hb_004899_340 Hb_003929_190 Hb_003929_190 Hb_000071_160--Hb_003929_190 Hb_001711_080--Hb_005941_030 Hb_001711_080--Hb_004899_340 Hb_001221_190 Hb_001221_190 Hb_001711_080--Hb_001221_190 Hb_001711_080--Hb_009838_020 Hb_025645_020 Hb_025645_020 Hb_001711_080--Hb_025645_020 Hb_001711_080--Hb_014361_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00147 4.18394 4.69997 15.5654 1.50762 2.91698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0534076 0.342922 5.94402

CAGE analysis