Hb_001711_080

Information

Type transcription factor
Description TF Family: C2C2-LSD
Location Contig1711: 61882-65348
Sequence    

Annotation

kegg
ID pda:103714033
description protein LSD1
nr
ID XP_008799372.1
description PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
swissprot
ID Q93ZB1
description Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1
trembl
ID V7CEH5
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G230100g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15988: 62180-65153 , PASA_asmbl_15989: 62343-63409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_080 0.0 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
2 Hb_005941_030 0.1527869178 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
3 Hb_004899_340 0.1531923122 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
4 Hb_001221_190 0.1567797191 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
5 Hb_009838_020 0.1584101148 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
6 Hb_025645_020 0.163464747 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
7 Hb_014361_090 0.17205335 - - acyl-CoA binding protein 3A [Vernicia fordii]
8 Hb_007044_160 0.1768570583 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
9 Hb_007192_020 0.1808104171 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
10 Hb_030565_050 0.1810448412 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
11 Hb_011828_010 0.1835138469 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
12 Hb_001140_170 0.1835698414 - - PREDICTED: remorin [Jatropha curcas]
13 Hb_002311_330 0.1839959662 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_011021_010 0.1883665312 - - kinase, putative [Ricinus communis]
15 Hb_000556_010 0.1895760207 - - glycerate dehydrogenase, putative [Ricinus communis]
16 Hb_000071_160 0.1944915474 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
17 Hb_002559_030 0.1974871264 - - oxidoreductase, putative [Ricinus communis]
18 Hb_000330_020 0.199766197 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
19 Hb_002129_020 0.1997927224 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
20 Hb_001976_060 0.2021939143 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001711_080 Hb_001711_080 Hb_005941_030 Hb_005941_030 Hb_001711_080--Hb_005941_030 Hb_004899_340 Hb_004899_340 Hb_001711_080--Hb_004899_340 Hb_001221_190 Hb_001221_190 Hb_001711_080--Hb_001221_190 Hb_009838_020 Hb_009838_020 Hb_001711_080--Hb_009838_020 Hb_025645_020 Hb_025645_020 Hb_001711_080--Hb_025645_020 Hb_014361_090 Hb_014361_090 Hb_001711_080--Hb_014361_090 Hb_000071_160 Hb_000071_160 Hb_005941_030--Hb_000071_160 Hb_014497_040 Hb_014497_040 Hb_005941_030--Hb_014497_040 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_003029_060 Hb_003029_060 Hb_005941_030--Hb_003029_060 Hb_005941_030--Hb_014361_090 Hb_005941_030--Hb_009838_020 Hb_011021_010 Hb_011021_010 Hb_004899_340--Hb_011021_010 Hb_001969_140 Hb_001969_140 Hb_004899_340--Hb_001969_140 Hb_001623_080 Hb_001623_080 Hb_004899_340--Hb_001623_080 Hb_000959_300 Hb_000959_300 Hb_004899_340--Hb_000959_300 Hb_004899_340--Hb_009838_020 Hb_004899_340--Hb_014361_090 Hb_001221_190--Hb_009838_020 Hb_001221_190--Hb_004899_340 Hb_004545_180 Hb_004545_180 Hb_001221_190--Hb_004545_180 Hb_001221_200 Hb_001221_200 Hb_001221_190--Hb_001221_200 Hb_000023_270 Hb_000023_270 Hb_001221_190--Hb_000023_270 Hb_009838_020--Hb_003029_060 Hb_009838_020--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_009838_020--Hb_000977_290 Hb_003177_040 Hb_003177_040 Hb_025645_020--Hb_003177_040 Hb_000176_080 Hb_000176_080 Hb_025645_020--Hb_000176_080 Hb_000108_180 Hb_000108_180 Hb_025645_020--Hb_000108_180 Hb_150486_010 Hb_150486_010 Hb_025645_020--Hb_150486_010 Hb_003623_040 Hb_003623_040 Hb_025645_020--Hb_003623_040 Hb_001789_100 Hb_001789_100 Hb_025645_020--Hb_001789_100 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_014361_090--Hb_000071_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.871254 3.22477 3.58303 17.9214 2.21091 5.72127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.374033 0.646952 0.422381 0.883308 10.1881

CAGE analysis