Hb_000023_270

Information

Type -
Description -
Location Contig23: 494118-496538
Sequence    

Annotation

kegg
ID rcu:RCOM_0920520
description hypothetical protein
nr
ID XP_002515398.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q03730
description Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML018C PE=1 SV=1
trembl
ID B9RNS9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0920520 PE=4 SV=1
Gene Ontology
ID GO:0016021
description thiamine-repressible mitochondrial transport protein thi74-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23958: 494133-509080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_022149_020 0.1613837243 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001221_190 0.1764012957 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
4 Hb_005976_070 0.1828237969 - - triacylglycerol lipase, putative [Ricinus communis]
5 Hb_001252_030 0.2015751597 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
6 Hb_000347_190 0.2041877178 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
7 Hb_071079_020 0.2111230162 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
8 Hb_000130_130 0.2125294655 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
9 Hb_001221_200 0.2134890946 - - -
10 Hb_119044_010 0.2151966213 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
11 Hb_000032_360 0.2152273481 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
12 Hb_004899_340 0.2156254539 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_001474_060 0.2200798947 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
14 Hb_001819_020 0.2224363795 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
15 Hb_004375_120 0.2227971144 - - PREDICTED: dnaJ homolog subfamily B member 3-like [Jatropha curcas]
16 Hb_001677_040 0.2236399693 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
17 Hb_011649_010 0.2237070674 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
18 Hb_000574_170 0.224392237 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
19 Hb_011021_010 0.2259297063 - - kinase, putative [Ricinus communis]
20 Hb_003581_230 0.2259588789 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000023_270 Hb_000023_270 Hb_022149_020 Hb_022149_020 Hb_000023_270--Hb_022149_020 Hb_001221_190 Hb_001221_190 Hb_000023_270--Hb_001221_190 Hb_005976_070 Hb_005976_070 Hb_000023_270--Hb_005976_070 Hb_001252_030 Hb_001252_030 Hb_000023_270--Hb_001252_030 Hb_000347_190 Hb_000347_190 Hb_000023_270--Hb_000347_190 Hb_071079_020 Hb_071079_020 Hb_000023_270--Hb_071079_020 Hb_000574_170 Hb_000574_170 Hb_022149_020--Hb_000574_170 Hb_001421_030 Hb_001421_030 Hb_022149_020--Hb_001421_030 Hb_010337_040 Hb_010337_040 Hb_022149_020--Hb_010337_040 Hb_000333_030 Hb_000333_030 Hb_022149_020--Hb_000333_030 Hb_000482_120 Hb_000482_120 Hb_022149_020--Hb_000482_120 Hb_009838_020 Hb_009838_020 Hb_001221_190--Hb_009838_020 Hb_004899_340 Hb_004899_340 Hb_001221_190--Hb_004899_340 Hb_001711_080 Hb_001711_080 Hb_001221_190--Hb_001711_080 Hb_004545_180 Hb_004545_180 Hb_001221_190--Hb_004545_180 Hb_001221_200 Hb_001221_200 Hb_001221_190--Hb_001221_200 Hb_011649_010 Hb_011649_010 Hb_005976_070--Hb_011649_010 Hb_000590_110 Hb_000590_110 Hb_005976_070--Hb_000590_110 Hb_000539_040 Hb_000539_040 Hb_005976_070--Hb_000539_040 Hb_002003_130 Hb_002003_130 Hb_005976_070--Hb_002003_130 Hb_006472_040 Hb_006472_040 Hb_005976_070--Hb_006472_040 Hb_003602_100 Hb_003602_100 Hb_005976_070--Hb_003602_100 Hb_001053_020 Hb_001053_020 Hb_001252_030--Hb_001053_020 Hb_000103_230 Hb_000103_230 Hb_001252_030--Hb_000103_230 Hb_003849_070 Hb_003849_070 Hb_001252_030--Hb_003849_070 Hb_020141_030 Hb_020141_030 Hb_001252_030--Hb_020141_030 Hb_000787_210 Hb_000787_210 Hb_001252_030--Hb_000787_210 Hb_005977_060 Hb_005977_060 Hb_001252_030--Hb_005977_060 Hb_001493_060 Hb_001493_060 Hb_000347_190--Hb_001493_060 Hb_004242_170 Hb_004242_170 Hb_000347_190--Hb_004242_170 Hb_000350_030 Hb_000350_030 Hb_000347_190--Hb_000350_030 Hb_003006_090 Hb_003006_090 Hb_000347_190--Hb_003006_090 Hb_001677_040 Hb_001677_040 Hb_000347_190--Hb_001677_040 Hb_035834_010 Hb_035834_010 Hb_000347_190--Hb_035834_010 Hb_000108_150 Hb_000108_150 Hb_071079_020--Hb_000108_150 Hb_000045_050 Hb_000045_050 Hb_071079_020--Hb_000045_050 Hb_000099_170 Hb_000099_170 Hb_071079_020--Hb_000099_170 Hb_000061_250 Hb_000061_250 Hb_071079_020--Hb_000061_250 Hb_071079_020--Hb_004242_170 Hb_005181_120 Hb_005181_120 Hb_071079_020--Hb_005181_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115581 1.4149 8.76122 11.4008 3.24053 2.65822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0440394 0 0.577847 0.44464 13.1385

CAGE analysis