Hb_022149_020

Information

Type -
Description -
Location Contig22149: 5610-8457
Sequence    

Annotation

kegg
ID rcu:RCOM_0916130
description hypothetical protein
nr
ID XP_002532330.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4HSD5
description Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1
trembl
ID B9T261
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0916130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022149_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000574_170 0.152770057 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
3 Hb_000023_270 0.1613837243 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001421_030 0.1695785955 - - -
5 Hb_010337_040 0.1870428493 - - -
6 Hb_000333_030 0.1874641913 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_000482_120 0.1876714183 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
8 Hb_001221_190 0.1895750231 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
9 Hb_000071_160 0.1900419466 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
10 Hb_009838_020 0.1935146016 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
11 Hb_000350_030 0.2015207901 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
12 Hb_004899_340 0.2025770091 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_000347_190 0.2038656735 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
14 Hb_004545_180 0.2068733745 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_011021_010 0.2094951676 - - kinase, putative [Ricinus communis]
16 Hb_004330_020 0.2096522498 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
17 Hb_001819_020 0.2114088143 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
18 Hb_000181_230 0.2142827585 - - copper ion binding protein, putative [Ricinus communis]
19 Hb_014361_090 0.2146513438 - - acyl-CoA binding protein 3A [Vernicia fordii]
20 Hb_001855_020 0.2162060692 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_022149_020 Hb_022149_020 Hb_000574_170 Hb_000574_170 Hb_022149_020--Hb_000574_170 Hb_000023_270 Hb_000023_270 Hb_022149_020--Hb_000023_270 Hb_001421_030 Hb_001421_030 Hb_022149_020--Hb_001421_030 Hb_010337_040 Hb_010337_040 Hb_022149_020--Hb_010337_040 Hb_000333_030 Hb_000333_030 Hb_022149_020--Hb_000333_030 Hb_000482_120 Hb_000482_120 Hb_022149_020--Hb_000482_120 Hb_000574_170--Hb_000333_030 Hb_002217_360 Hb_002217_360 Hb_000574_170--Hb_002217_360 Hb_000574_170--Hb_000482_120 Hb_000959_130 Hb_000959_130 Hb_000574_170--Hb_000959_130 Hb_010222_040 Hb_010222_040 Hb_000574_170--Hb_010222_040 Hb_000574_170--Hb_010337_040 Hb_001221_190 Hb_001221_190 Hb_000023_270--Hb_001221_190 Hb_005976_070 Hb_005976_070 Hb_000023_270--Hb_005976_070 Hb_001252_030 Hb_001252_030 Hb_000023_270--Hb_001252_030 Hb_000347_190 Hb_000347_190 Hb_000023_270--Hb_000347_190 Hb_071079_020 Hb_071079_020 Hb_000023_270--Hb_071079_020 Hb_004807_050 Hb_004807_050 Hb_001421_030--Hb_004807_050 Hb_001087_010 Hb_001087_010 Hb_001421_030--Hb_001087_010 Hb_009838_020 Hb_009838_020 Hb_001421_030--Hb_009838_020 Hb_002110_090 Hb_002110_090 Hb_001421_030--Hb_002110_090 Hb_001146_050 Hb_001146_050 Hb_001421_030--Hb_001146_050 Hb_000453_020 Hb_000453_020 Hb_010337_040--Hb_000453_020 Hb_010337_040--Hb_000482_120 Hb_000327_320 Hb_000327_320 Hb_010337_040--Hb_000327_320 Hb_000395_310 Hb_000395_310 Hb_010337_040--Hb_000395_310 Hb_005784_010 Hb_005784_010 Hb_010337_040--Hb_005784_010 Hb_000333_030--Hb_010222_040 Hb_000333_030--Hb_002217_360 Hb_001677_040 Hb_001677_040 Hb_000333_030--Hb_001677_040 Hb_000083_080 Hb_000083_080 Hb_000333_030--Hb_000083_080 Hb_002662_110 Hb_002662_110 Hb_000333_030--Hb_002662_110 Hb_000482_120--Hb_000453_020 Hb_000692_100 Hb_000692_100 Hb_000482_120--Hb_000692_100 Hb_003029_120 Hb_003029_120 Hb_000482_120--Hb_003029_120 Hb_001855_020 Hb_001855_020 Hb_000482_120--Hb_001855_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00623023 0.0171043 0.032947 0.00757057 0.00709519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00536161 0.0287224

CAGE analysis