Hb_001146_050

Information

Type -
Description -
Location Contig1146: 56068-63663
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001146_050 0.0 - - -
2 Hb_004878_010 0.1115638955 - - -
3 Hb_004409_030 0.1944470517 - - Glutamine synthetase 1,4 [Theobroma cacao]
4 Hb_007718_020 0.1958106007 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
5 Hb_004657_030 0.2077743322 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
6 Hb_146510_010 0.2079831795 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
7 Hb_086336_010 0.2179809372 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
8 Hb_001421_030 0.2227783704 - - -
9 Hb_000019_010 0.2241971439 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
10 Hb_038862_010 0.2252882863 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
11 Hb_012490_110 0.2324167488 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
12 Hb_000714_120 0.2329826504 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
13 Hb_147218_010 0.2349924394 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_003058_200 0.2377072345 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
15 Hb_001304_130 0.2378103945 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
16 Hb_002072_010 0.2384131619 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000366_020 0.239687205 - - -
18 Hb_001437_140 0.2399093184 - - -
19 Hb_014497_040 0.2411038206 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
20 Hb_000058_090 0.2415061317 - - -

Gene co-expression network

sample Hb_001146_050 Hb_001146_050 Hb_004878_010 Hb_004878_010 Hb_001146_050--Hb_004878_010 Hb_004409_030 Hb_004409_030 Hb_001146_050--Hb_004409_030 Hb_007718_020 Hb_007718_020 Hb_001146_050--Hb_007718_020 Hb_004657_030 Hb_004657_030 Hb_001146_050--Hb_004657_030 Hb_146510_010 Hb_146510_010 Hb_001146_050--Hb_146510_010 Hb_086336_010 Hb_086336_010 Hb_001146_050--Hb_086336_010 Hb_004878_010--Hb_007718_020 Hb_038862_010 Hb_038862_010 Hb_004878_010--Hb_038862_010 Hb_012490_110 Hb_012490_110 Hb_004878_010--Hb_012490_110 Hb_004878_010--Hb_004409_030 Hb_005271_230 Hb_005271_230 Hb_004878_010--Hb_005271_230 Hb_069659_010 Hb_069659_010 Hb_004409_030--Hb_069659_010 Hb_000220_080 Hb_000220_080 Hb_004409_030--Hb_000220_080 Hb_003371_190 Hb_003371_190 Hb_004409_030--Hb_003371_190 Hb_014497_040 Hb_014497_040 Hb_004409_030--Hb_014497_040 Hb_000000_110 Hb_000000_110 Hb_004409_030--Hb_000000_110 Hb_000000_120 Hb_000000_120 Hb_004409_030--Hb_000000_120 Hb_033555_010 Hb_033555_010 Hb_007718_020--Hb_033555_010 Hb_050034_010 Hb_050034_010 Hb_007718_020--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_007718_020--Hb_007456_020 Hb_000771_090 Hb_000771_090 Hb_007718_020--Hb_000771_090 Hb_003058_200 Hb_003058_200 Hb_004657_030--Hb_003058_200 Hb_000723_010 Hb_000723_010 Hb_004657_030--Hb_000723_010 Hb_098315_090 Hb_098315_090 Hb_004657_030--Hb_098315_090 Hb_002072_010 Hb_002072_010 Hb_004657_030--Hb_002072_010 Hb_000244_260 Hb_000244_260 Hb_004657_030--Hb_000244_260 Hb_150346_010 Hb_150346_010 Hb_004657_030--Hb_150346_010 Hb_169051_010 Hb_169051_010 Hb_146510_010--Hb_169051_010 Hb_014720_030 Hb_014720_030 Hb_146510_010--Hb_014720_030 Hb_001446_060 Hb_001446_060 Hb_146510_010--Hb_001446_060 Hb_003125_180 Hb_003125_180 Hb_146510_010--Hb_003125_180 Hb_146510_010--Hb_000000_120 Hb_001898_020 Hb_001898_020 Hb_146510_010--Hb_001898_020 Hb_147218_010 Hb_147218_010 Hb_086336_010--Hb_147218_010 Hb_001486_060 Hb_001486_060 Hb_086336_010--Hb_001486_060 Hb_001304_130 Hb_001304_130 Hb_086336_010--Hb_001304_130 Hb_086336_010--Hb_003371_190 Hb_000818_080 Hb_000818_080 Hb_086336_010--Hb_000818_080 Hb_005288_210 Hb_005288_210 Hb_086336_010--Hb_005288_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.030115 0.106222 0.0453828 0.240652 0.0565 0.163872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.22079 0.218394

CAGE analysis