Hb_086336_010

Information

Type -
Description -
Location Contig86336: 584-1372
Sequence    

Annotation

kegg
ID tcc:TCM_046052
description Phosphoprotein phosphatase
nr
ID KDO64062.1
description hypothetical protein CISIN_1g022501mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FKT2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022501mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086336_010 0.0 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
2 Hb_147218_010 0.1044035128 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_001486_060 0.1467563619 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
4 Hb_001304_130 0.1486328908 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
5 Hb_003371_190 0.1520536319 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
6 Hb_000818_080 0.1534749305 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
7 Hb_005288_210 0.1571533564 - - hypothetical protein VITISV_017217 [Vitis vinifera]
8 Hb_011032_010 0.1614086187 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
9 Hb_000139_510 0.1688375147 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
10 Hb_000107_550 0.1695496523 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
11 Hb_000793_040 0.1727185267 - - PREDICTED: transcription factor LHW [Jatropha curcas]
12 Hb_001446_060 0.1744667172 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_005217_040 0.1753217057 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
14 Hb_002420_010 0.176849467 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
15 Hb_000979_160 0.1772242359 - - hypothetical protein RCOM_0629030 [Ricinus communis]
16 Hb_003092_050 0.1816205967 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
17 Hb_000019_170 0.1817738086 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
18 Hb_155150_010 0.1830990146 - - kinase, putative [Ricinus communis]
19 Hb_000058_090 0.1833811411 - - -
20 Hb_000019_010 0.1835918968 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]

Gene co-expression network

sample Hb_086336_010 Hb_086336_010 Hb_147218_010 Hb_147218_010 Hb_086336_010--Hb_147218_010 Hb_001486_060 Hb_001486_060 Hb_086336_010--Hb_001486_060 Hb_001304_130 Hb_001304_130 Hb_086336_010--Hb_001304_130 Hb_003371_190 Hb_003371_190 Hb_086336_010--Hb_003371_190 Hb_000818_080 Hb_000818_080 Hb_086336_010--Hb_000818_080 Hb_005288_210 Hb_005288_210 Hb_086336_010--Hb_005288_210 Hb_147218_010--Hb_001304_130 Hb_011032_010 Hb_011032_010 Hb_147218_010--Hb_011032_010 Hb_000875_070 Hb_000875_070 Hb_147218_010--Hb_000875_070 Hb_121992_010 Hb_121992_010 Hb_147218_010--Hb_121992_010 Hb_147218_010--Hb_001486_060 Hb_001486_060--Hb_000818_080 Hb_000793_040 Hb_000793_040 Hb_001486_060--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_001486_060--Hb_002026_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_004657_080 Hb_004657_080 Hb_001486_060--Hb_004657_080 Hb_001304_130--Hb_121992_010 Hb_001304_130--Hb_000875_070 Hb_003216_070 Hb_003216_070 Hb_001304_130--Hb_003216_070 Hb_001304_130--Hb_001486_060 Hb_030565_110 Hb_030565_110 Hb_003371_190--Hb_030565_110 Hb_000679_040 Hb_000679_040 Hb_003371_190--Hb_000679_040 Hb_002072_010 Hb_002072_010 Hb_003371_190--Hb_002072_010 Hb_010381_020 Hb_010381_020 Hb_003371_190--Hb_010381_020 Hb_009535_030 Hb_009535_030 Hb_003371_190--Hb_009535_030 Hb_000254_070 Hb_000254_070 Hb_003371_190--Hb_000254_070 Hb_000818_080--Hb_000793_040 Hb_000818_080--Hb_002026_080 Hb_000818_080--Hb_003371_190 Hb_002928_120 Hb_002928_120 Hb_000818_080--Hb_002928_120 Hb_000818_080--Hb_004657_080 Hb_005288_210--Hb_000793_040 Hb_000438_020 Hb_000438_020 Hb_005288_210--Hb_000438_020 Hb_002420_010 Hb_002420_010 Hb_005288_210--Hb_002420_010 Hb_002671_060 Hb_002671_060 Hb_005288_210--Hb_002671_060 Hb_003226_030 Hb_003226_030 Hb_005288_210--Hb_003226_030 Hb_002833_020 Hb_002833_020 Hb_005288_210--Hb_002833_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0750814 1.67601 0.415726 2.56058 0.494077 0.499177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137481 0 0.195288 2.56087 2.16692

CAGE analysis