Hb_002026_080

Information

Type desease resistance
Description Gene Name: TIR_2
Location Contig2026: 75453-78449
Sequence    

Annotation

kegg
ID rcu:RCOM_1687230
description nucleoside-triphosphatase, putative
nr
ID XP_002509825.1
description nucleoside-triphosphatase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE1
description Nucleoside-triphosphatase, putative OS=Ricinus communis GN=RCOM_1687230 PE=4 SV=1
Gene Ontology
ID GO:0005886
description disease resistance protein (tir-nbs class)

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20623: 74047-75499 , PASA_asmbl_20624: 74603-75564 , PASA_asmbl_20625: 75825-76246 , PASA_asmbl_20627: 77321-77553 , PASA_asmbl_20628: 77694-77980 , PASA_asmbl_20629: 78041-78298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_080 0.0 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
2 Hb_000793_040 0.1306680374 - - PREDICTED: transcription factor LHW [Jatropha curcas]
3 Hb_001486_060 0.1326508069 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
4 Hb_000834_040 0.1376023224 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
5 Hb_000818_080 0.1388151299 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
6 Hb_000702_060 0.1461847448 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001493_020 0.1485732954 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
8 Hb_002928_120 0.1486764624 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
9 Hb_029977_010 0.1530629585 - - catalytic, putative [Ricinus communis]
10 Hb_168180_010 0.1542735219 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003562_030 0.1592054556 - - -
12 Hb_001021_030 0.1612999383 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_005181_180 0.1634307234 - - conserved hypothetical protein [Ricinus communis]
14 Hb_025432_010 0.1639091894 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
15 Hb_042509_020 0.1655632752 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
16 Hb_004495_020 0.1662383689 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_117168_010 0.171804351 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
18 Hb_001123_010 0.1718595046 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000816_020 0.1726388143 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
20 Hb_003142_060 0.1735511201 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002026_080 Hb_002026_080 Hb_000793_040 Hb_000793_040 Hb_002026_080--Hb_000793_040 Hb_001486_060 Hb_001486_060 Hb_002026_080--Hb_001486_060 Hb_000834_040 Hb_000834_040 Hb_002026_080--Hb_000834_040 Hb_000818_080 Hb_000818_080 Hb_002026_080--Hb_000818_080 Hb_000702_060 Hb_000702_060 Hb_002026_080--Hb_000702_060 Hb_001493_020 Hb_001493_020 Hb_002026_080--Hb_001493_020 Hb_000793_040--Hb_001486_060 Hb_002928_120 Hb_002928_120 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_000793_040--Hb_001493_020 Hb_002420_010 Hb_002420_010 Hb_000793_040--Hb_002420_010 Hb_001486_060--Hb_000818_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_086336_010 Hb_086336_010 Hb_001486_060--Hb_086336_010 Hb_004657_080 Hb_004657_080 Hb_001486_060--Hb_004657_080 Hb_003142_060 Hb_003142_060 Hb_000834_040--Hb_003142_060 Hb_003562_030 Hb_003562_030 Hb_000834_040--Hb_003562_030 Hb_002307_010 Hb_002307_010 Hb_000834_040--Hb_002307_010 Hb_004324_030 Hb_004324_030 Hb_000834_040--Hb_004324_030 Hb_042509_020 Hb_042509_020 Hb_000834_040--Hb_042509_020 Hb_000003_020 Hb_000003_020 Hb_000834_040--Hb_000003_020 Hb_000818_080--Hb_000793_040 Hb_003371_190 Hb_003371_190 Hb_000818_080--Hb_003371_190 Hb_000818_080--Hb_002928_120 Hb_000818_080--Hb_004657_080 Hb_000684_360 Hb_000684_360 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000347_110 Hb_000347_110 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_005181_180 Hb_005181_180 Hb_000702_060--Hb_005181_180 Hb_029977_010 Hb_029977_010 Hb_001493_020--Hb_029977_010 Hb_000215_250 Hb_000215_250 Hb_001493_020--Hb_000215_250 Hb_000317_220 Hb_000317_220 Hb_001493_020--Hb_000317_220 Hb_188281_050 Hb_188281_050 Hb_001493_020--Hb_188281_050 Hb_001493_020--Hb_020378_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.081462 1.24335 0.437665 1.93974 0.108785 0.207707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116257 0.0686144 0.306251 3.27482 0.902745

CAGE analysis