Hb_000818_080

Information

Type -
Description -
Location Contig818: 78947-87300
Sequence    

Annotation

kegg
ID rcu:RCOM_1386130
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_012073160.1
description PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
swissprot
ID Q8LPQ8
description Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=1 SV=2
trembl
ID A0A067LQ08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10737 PE=3 SV=1
Gene Ontology
ID GO:0016021
description monosaccharide-sensing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59503: 80077-87210 , PASA_asmbl_59504: 80548-87210 , PASA_asmbl_59505: 80585-87210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000818_080 0.0 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
2 Hb_001486_060 0.0992144032 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
3 Hb_000793_040 0.1374596296 - - PREDICTED: transcription factor LHW [Jatropha curcas]
4 Hb_002026_080 0.1388151299 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
5 Hb_003371_190 0.1454511963 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
6 Hb_002928_120 0.1487117328 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
7 Hb_004657_080 0.1502102498 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
8 Hb_168180_010 0.1508706297 - - conserved hypothetical protein [Ricinus communis]
9 Hb_086336_010 0.1534749305 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
10 Hb_030565_110 0.155033873 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
11 Hb_048643_010 0.1569512081 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_028115_010 0.1628813717 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000000_120 0.1648181424 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
14 Hb_147218_010 0.1711705982 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_001900_060 0.1732106102 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
16 Hb_029977_010 0.1741280618 - - catalytic, putative [Ricinus communis]
17 Hb_000540_040 0.176597999 - - PREDICTED: chitinase 2 [Amborella trichopoda]
18 Hb_009535_030 0.1774260703 - - CP2 [Hevea brasiliensis]
19 Hb_001663_120 0.1786714053 - - PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
20 Hb_001247_270 0.1788518568 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000818_080 Hb_000818_080 Hb_001486_060 Hb_001486_060 Hb_000818_080--Hb_001486_060 Hb_000793_040 Hb_000793_040 Hb_000818_080--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_000818_080--Hb_002026_080 Hb_003371_190 Hb_003371_190 Hb_000818_080--Hb_003371_190 Hb_002928_120 Hb_002928_120 Hb_000818_080--Hb_002928_120 Hb_004657_080 Hb_004657_080 Hb_000818_080--Hb_004657_080 Hb_001486_060--Hb_000793_040 Hb_001486_060--Hb_002026_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_086336_010 Hb_086336_010 Hb_001486_060--Hb_086336_010 Hb_001486_060--Hb_004657_080 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_001493_020 Hb_001493_020 Hb_000793_040--Hb_001493_020 Hb_002420_010 Hb_002420_010 Hb_000793_040--Hb_002420_010 Hb_002026_080--Hb_000793_040 Hb_000834_040 Hb_000834_040 Hb_002026_080--Hb_000834_040 Hb_000702_060 Hb_000702_060 Hb_002026_080--Hb_000702_060 Hb_002026_080--Hb_001493_020 Hb_030565_110 Hb_030565_110 Hb_003371_190--Hb_030565_110 Hb_000679_040 Hb_000679_040 Hb_003371_190--Hb_000679_040 Hb_002072_010 Hb_002072_010 Hb_003371_190--Hb_002072_010 Hb_010381_020 Hb_010381_020 Hb_003371_190--Hb_010381_020 Hb_009535_030 Hb_009535_030 Hb_003371_190--Hb_009535_030 Hb_000254_070 Hb_000254_070 Hb_003371_190--Hb_000254_070 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110 Hb_078361_010 Hb_078361_010 Hb_004657_080--Hb_078361_010 Hb_000020_030 Hb_000020_030 Hb_004657_080--Hb_000020_030 Hb_001728_130 Hb_001728_130 Hb_004657_080--Hb_001728_130 Hb_116194_010 Hb_116194_010 Hb_004657_080--Hb_116194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91972 19.1491 4.75733 45.6844 5.40829 4.30796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27617 1.75802 2.56049 41.7285 16.6404

CAGE analysis