Hb_078361_010

Information

Type -
Description -
Location Contig78361: 7966-8551
Sequence    

Annotation

kegg
ID rcu:RCOM_1681210
description DNA binding protein, putative
nr
ID XP_012087078.1
description PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
swissprot
ID O49658
description AT-hook motif nuclear-localized protein 2 OS=Arabidopsis thaliana GN=AHL2 PE=2 SV=1
trembl
ID A0A067JNW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20738 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078361_010 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
2 Hb_006846_030 0.1235878463 - - respiratory burst oxidase A [Manihot esculenta]
3 Hb_000095_070 0.1279770471 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001728_130 0.1322998945 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_012743_020 0.1327912786 - - serine/threonine protein phosphatase, putative [Ricinus communis]
6 Hb_002042_160 0.1336326509 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
7 Hb_164117_010 0.1342655647 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
8 Hb_032260_130 0.1353430652 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
9 Hb_002448_020 0.1376661743 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_019026_050 0.1389493541 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003847_050 0.1400670164 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
12 Hb_000155_040 0.1423374518 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_000020_030 0.1436005472 - - protein binding protein, putative [Ricinus communis]
14 Hb_007632_130 0.1440863491 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
15 Hb_085315_010 0.1444755095 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
16 Hb_000347_420 0.1448335629 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
17 Hb_029260_010 0.1450635828 - - nitrate transporter, putative [Ricinus communis]
18 Hb_000112_050 0.1454219319 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
19 Hb_004657_080 0.1471259534 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
20 Hb_007943_020 0.1479872028 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_078361_010 Hb_078361_010 Hb_006846_030 Hb_006846_030 Hb_078361_010--Hb_006846_030 Hb_000095_070 Hb_000095_070 Hb_078361_010--Hb_000095_070 Hb_001728_130 Hb_001728_130 Hb_078361_010--Hb_001728_130 Hb_012743_020 Hb_012743_020 Hb_078361_010--Hb_012743_020 Hb_002042_160 Hb_002042_160 Hb_078361_010--Hb_002042_160 Hb_164117_010 Hb_164117_010 Hb_078361_010--Hb_164117_010 Hb_003847_050 Hb_003847_050 Hb_006846_030--Hb_003847_050 Hb_012787_050 Hb_012787_050 Hb_006846_030--Hb_012787_050 Hb_023956_010 Hb_023956_010 Hb_006846_030--Hb_023956_010 Hb_001568_010 Hb_001568_010 Hb_006846_030--Hb_001568_010 Hb_002448_020 Hb_002448_020 Hb_006846_030--Hb_002448_020 Hb_019026_050 Hb_019026_050 Hb_006846_030--Hb_019026_050 Hb_002814_050 Hb_002814_050 Hb_000095_070--Hb_002814_050 Hb_060198_010 Hb_060198_010 Hb_000095_070--Hb_060198_010 Hb_000347_420 Hb_000347_420 Hb_000095_070--Hb_000347_420 Hb_000095_070--Hb_001728_130 Hb_000959_120 Hb_000959_120 Hb_000095_070--Hb_000959_120 Hb_004307_070 Hb_004307_070 Hb_000095_070--Hb_004307_070 Hb_014361_040 Hb_014361_040 Hb_001728_130--Hb_014361_040 Hb_135720_010 Hb_135720_010 Hb_001728_130--Hb_135720_010 Hb_005545_110 Hb_005545_110 Hb_001728_130--Hb_005545_110 Hb_001728_130--Hb_164117_010 Hb_073808_010 Hb_073808_010 Hb_001728_130--Hb_073808_010 Hb_005357_020 Hb_005357_020 Hb_012743_020--Hb_005357_020 Hb_003226_030 Hb_003226_030 Hb_012743_020--Hb_003226_030 Hb_000589_240 Hb_000589_240 Hb_012743_020--Hb_000589_240 Hb_001143_140 Hb_001143_140 Hb_012743_020--Hb_001143_140 Hb_029260_010 Hb_029260_010 Hb_012743_020--Hb_029260_010 Hb_002000_130 Hb_002000_130 Hb_012743_020--Hb_002000_130 Hb_000994_100 Hb_000994_100 Hb_002042_160--Hb_000994_100 Hb_002970_070 Hb_002970_070 Hb_002042_160--Hb_002970_070 Hb_172633_020 Hb_172633_020 Hb_002042_160--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002042_160--Hb_184942_010 Hb_055529_010 Hb_055529_010 Hb_002042_160--Hb_055529_010 Hb_150084_010 Hb_150084_010 Hb_002042_160--Hb_150084_010 Hb_085315_010 Hb_085315_010 Hb_164117_010--Hb_085315_010 Hb_032260_130 Hb_032260_130 Hb_164117_010--Hb_032260_130 Hb_004893_010 Hb_004893_010 Hb_164117_010--Hb_004893_010 Hb_116194_010 Hb_116194_010 Hb_164117_010--Hb_116194_010 Hb_164117_010--Hb_019026_050 Hb_000127_080 Hb_000127_080 Hb_164117_010--Hb_000127_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163766 2.22506 1.18703 4.7506 0.0721662 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.132277 0 4.29906 2.63066

CAGE analysis