Hb_172633_020

Information

Type -
Description -
Location Contig172633: 15053-18527
Sequence    

Annotation

kegg
ID mdm:103427118
description probable LRR receptor-like serine/threonine-protein kinase At1g56140
nr
ID XP_011026778.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID A0A067KK01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08587 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g56140 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172633_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
2 Hb_002490_090 0.0558395465 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
3 Hb_184942_010 0.0748603655 - - STS14 protein precursor, putative [Ricinus communis]
4 Hb_002042_160 0.1018941114 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_150084_010 0.1070079677 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
6 Hb_006120_030 0.1088689761 - - -
7 Hb_000963_010 0.1135473335 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
8 Hb_001158_080 0.1245883391 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
9 Hb_007943_020 0.1276910851 - - transcription factor, putative [Ricinus communis]
10 Hb_055529_010 0.1312170573 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
11 Hb_001514_070 0.1327448339 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000155_040 0.1328229238 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_007123_020 0.1333623669 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
14 Hb_000994_100 0.1353554012 - - RALFL33, putative [Ricinus communis]
15 Hb_000844_100 0.1367141313 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
16 Hb_000917_120 0.1371813605 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000317_220 0.1381854039 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002870_010 0.1403426797 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
19 Hb_029260_010 0.1409335649 - - nitrate transporter, putative [Ricinus communis]
20 Hb_001329_110 0.1422930315 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]

Gene co-expression network

sample Hb_172633_020 Hb_172633_020 Hb_002490_090 Hb_002490_090 Hb_172633_020--Hb_002490_090 Hb_184942_010 Hb_184942_010 Hb_172633_020--Hb_184942_010 Hb_002042_160 Hb_002042_160 Hb_172633_020--Hb_002042_160 Hb_150084_010 Hb_150084_010 Hb_172633_020--Hb_150084_010 Hb_006120_030 Hb_006120_030 Hb_172633_020--Hb_006120_030 Hb_000963_010 Hb_000963_010 Hb_172633_020--Hb_000963_010 Hb_002490_090--Hb_006120_030 Hb_002490_090--Hb_184942_010 Hb_000917_120 Hb_000917_120 Hb_002490_090--Hb_000917_120 Hb_007123_020 Hb_007123_020 Hb_002490_090--Hb_007123_020 Hb_002490_090--Hb_150084_010 Hb_184942_010--Hb_000963_010 Hb_184942_010--Hb_150084_010 Hb_001158_080 Hb_001158_080 Hb_184942_010--Hb_001158_080 Hb_184942_010--Hb_002042_160 Hb_000994_100 Hb_000994_100 Hb_002042_160--Hb_000994_100 Hb_002970_070 Hb_002970_070 Hb_002042_160--Hb_002970_070 Hb_055529_010 Hb_055529_010 Hb_002042_160--Hb_055529_010 Hb_002042_160--Hb_150084_010 Hb_002333_010 Hb_002333_010 Hb_150084_010--Hb_002333_010 Hb_150084_010--Hb_000963_010 Hb_000172_740 Hb_000172_740 Hb_150084_010--Hb_000172_740 Hb_006120_030--Hb_000917_120 Hb_054865_030 Hb_054865_030 Hb_006120_030--Hb_054865_030 Hb_000011_120 Hb_000011_120 Hb_006120_030--Hb_000011_120 Hb_009659_040 Hb_009659_040 Hb_006120_030--Hb_009659_040 Hb_000963_010--Hb_002333_010 Hb_003787_060 Hb_003787_060 Hb_000963_010--Hb_003787_060 Hb_039496_010 Hb_039496_010 Hb_000963_010--Hb_039496_010 Hb_012787_050 Hb_012787_050 Hb_000963_010--Hb_012787_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.10443 1.69602 10.6026 0 0.0646105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.168407 0 0 19.5412 6.93538

CAGE analysis