Hb_054865_030

Information

Type -
Description -
Location Contig54865: 28936-29558
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48072: 28659-30392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_030 0.0 - - -
2 Hb_132515_010 0.0939929625 - - phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_006120_030 0.0992592727 - - -
4 Hb_000917_120 0.1147443465 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000740_130 0.1220147126 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_003060_080 0.1246497702 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
7 Hb_064482_010 0.1353624894 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002490_090 0.141525584 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
9 Hb_000844_100 0.1417502259 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
10 Hb_018212_020 0.1434606035 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
11 Hb_003212_010 0.1441455071 - - sucrose transporter 4 [Hevea brasiliensis]
12 Hb_000597_080 0.1463136222 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
13 Hb_003767_010 0.1473578733 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
14 Hb_001611_010 0.1503363916 - - scab resistance family protein [Populus trichocarpa]
15 Hb_029576_080 0.1504941111 - - Aspartic proteinase precursor, putative [Ricinus communis]
16 Hb_010813_030 0.1538448055 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
17 Hb_182021_010 0.153989208 - - sucrose transporter 4 [Hevea brasiliensis]
18 Hb_000254_150 0.1566533259 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
19 Hb_001675_130 0.1577827268 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
20 Hb_004713_050 0.1580348161 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]

Gene co-expression network

sample Hb_054865_030 Hb_054865_030 Hb_132515_010 Hb_132515_010 Hb_054865_030--Hb_132515_010 Hb_006120_030 Hb_006120_030 Hb_054865_030--Hb_006120_030 Hb_000917_120 Hb_000917_120 Hb_054865_030--Hb_000917_120 Hb_000740_130 Hb_000740_130 Hb_054865_030--Hb_000740_130 Hb_003060_080 Hb_003060_080 Hb_054865_030--Hb_003060_080 Hb_064482_010 Hb_064482_010 Hb_054865_030--Hb_064482_010 Hb_018212_020 Hb_018212_020 Hb_132515_010--Hb_018212_020 Hb_132515_010--Hb_064482_010 Hb_132515_010--Hb_000740_130 Hb_132515_010--Hb_003060_080 Hb_006326_030 Hb_006326_030 Hb_132515_010--Hb_006326_030 Hb_006120_030--Hb_000917_120 Hb_002490_090 Hb_002490_090 Hb_006120_030--Hb_002490_090 Hb_000011_120 Hb_000011_120 Hb_006120_030--Hb_000011_120 Hb_009659_040 Hb_009659_040 Hb_006120_030--Hb_009659_040 Hb_172633_020 Hb_172633_020 Hb_006120_030--Hb_172633_020 Hb_000917_120--Hb_009659_040 Hb_029576_080 Hb_029576_080 Hb_000917_120--Hb_029576_080 Hb_000597_080 Hb_000597_080 Hb_000917_120--Hb_000597_080 Hb_000917_120--Hb_000011_120 Hb_001660_050 Hb_001660_050 Hb_000917_120--Hb_001660_050 Hb_182021_010 Hb_182021_010 Hb_000740_130--Hb_182021_010 Hb_000844_100 Hb_000844_100 Hb_000740_130--Hb_000844_100 Hb_088916_010 Hb_088916_010 Hb_000740_130--Hb_088916_010 Hb_008692_010 Hb_008692_010 Hb_000740_130--Hb_008692_010 Hb_006569_110 Hb_006569_110 Hb_003060_080--Hb_006569_110 Hb_007894_260 Hb_007894_260 Hb_003060_080--Hb_007894_260 Hb_006970_100 Hb_006970_100 Hb_003060_080--Hb_006970_100 Hb_006651_010 Hb_006651_010 Hb_003060_080--Hb_006651_010 Hb_025526_010 Hb_025526_010 Hb_003060_080--Hb_025526_010 Hb_006938_010 Hb_006938_010 Hb_003060_080--Hb_006938_010 Hb_002997_050 Hb_002997_050 Hb_064482_010--Hb_002997_050 Hb_000644_040 Hb_000644_040 Hb_064482_010--Hb_000644_040 Hb_004713_050 Hb_004713_050 Hb_064482_010--Hb_004713_050 Hb_009510_060 Hb_009510_060 Hb_064482_010--Hb_009510_060 Hb_002555_030 Hb_002555_030 Hb_064482_010--Hb_002555_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.085262 2.39814 0.274521 1.16498 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.56597 2.23758

CAGE analysis