Hb_132515_010

Information

Type -
Description -
Location Contig132515: 2-460
Sequence    

Annotation

kegg
ID rcu:RCOM_1331730
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002521792.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S723
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1331730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132515_010 0.0 - - phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_054865_030 0.0939929625 - - -
3 Hb_018212_020 0.1077164815 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
4 Hb_064482_010 0.1151520927 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000740_130 0.1167032248 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_003060_080 0.1203947972 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
7 Hb_006326_030 0.1206365148 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006120_030 0.1233317278 - - -
9 Hb_010813_030 0.1236174674 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
10 Hb_182021_010 0.1259889246 - - sucrose transporter 4 [Hevea brasiliensis]
11 Hb_006569_110 0.1307772238 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000254_150 0.1321062182 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
13 Hb_000644_040 0.1394763019 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
14 Hb_000917_120 0.1418884574 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007894_260 0.1461872533 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_002997_050 0.1493738707 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
17 Hb_003212_010 0.1537049243 - - sucrose transporter 4 [Hevea brasiliensis]
18 Hb_000920_360 0.1541939469 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
19 Hb_009510_060 0.1559862772 - - -
20 Hb_001611_010 0.1564136467 - - scab resistance family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_132515_010 Hb_132515_010 Hb_054865_030 Hb_054865_030 Hb_132515_010--Hb_054865_030 Hb_018212_020 Hb_018212_020 Hb_132515_010--Hb_018212_020 Hb_064482_010 Hb_064482_010 Hb_132515_010--Hb_064482_010 Hb_000740_130 Hb_000740_130 Hb_132515_010--Hb_000740_130 Hb_003060_080 Hb_003060_080 Hb_132515_010--Hb_003060_080 Hb_006326_030 Hb_006326_030 Hb_132515_010--Hb_006326_030 Hb_006120_030 Hb_006120_030 Hb_054865_030--Hb_006120_030 Hb_000917_120 Hb_000917_120 Hb_054865_030--Hb_000917_120 Hb_054865_030--Hb_000740_130 Hb_054865_030--Hb_003060_080 Hb_054865_030--Hb_064482_010 Hb_010813_030 Hb_010813_030 Hb_018212_020--Hb_010813_030 Hb_000254_150 Hb_000254_150 Hb_018212_020--Hb_000254_150 Hb_018212_020--Hb_006326_030 Hb_006569_110 Hb_006569_110 Hb_018212_020--Hb_006569_110 Hb_002997_050 Hb_002997_050 Hb_018212_020--Hb_002997_050 Hb_064482_010--Hb_002997_050 Hb_000644_040 Hb_000644_040 Hb_064482_010--Hb_000644_040 Hb_004713_050 Hb_004713_050 Hb_064482_010--Hb_004713_050 Hb_009510_060 Hb_009510_060 Hb_064482_010--Hb_009510_060 Hb_002555_030 Hb_002555_030 Hb_064482_010--Hb_002555_030 Hb_182021_010 Hb_182021_010 Hb_000740_130--Hb_182021_010 Hb_000844_100 Hb_000844_100 Hb_000740_130--Hb_000844_100 Hb_088916_010 Hb_088916_010 Hb_000740_130--Hb_088916_010 Hb_008692_010 Hb_008692_010 Hb_000740_130--Hb_008692_010 Hb_003060_080--Hb_006569_110 Hb_007894_260 Hb_007894_260 Hb_003060_080--Hb_007894_260 Hb_006970_100 Hb_006970_100 Hb_003060_080--Hb_006970_100 Hb_006651_010 Hb_006651_010 Hb_003060_080--Hb_006651_010 Hb_025526_010 Hb_025526_010 Hb_003060_080--Hb_025526_010 Hb_006938_010 Hb_006938_010 Hb_003060_080--Hb_006938_010 Hb_006326_030--Hb_010813_030 Hb_000286_190 Hb_000286_190 Hb_006326_030--Hb_000286_190 Hb_000920_360 Hb_000920_360 Hb_006326_030--Hb_000920_360 Hb_000876_050 Hb_000876_050 Hb_006326_030--Hb_000876_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 14.5342 1.21448 5.35803 0.133135 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.202445 29.0224 12.0442

CAGE analysis