Hb_004713_050

Information

Type -
Description -
Location Contig4713: 47787-54164
Sequence    

Annotation

kegg
ID rcu:RCOM_1573430
description Cycloartenol synthase, putative (EC:5.4.99.8)
nr
ID Q8W3Z1.1
description RecName: Full=Beta-amyrin synthase [Betula platyphylla]
swissprot
ID Q8W3Z1
description Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1
trembl
ID B9RHS9
description Terpene cyclase/mutase family member OS=Ricinus communis GN=RCOM_1573430 PE=3 SV=1
Gene Ontology
ID GO:0042300
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44289: 52006-52681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004713_050 0.0 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
2 Hb_002997_050 0.1181902884 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
3 Hb_064482_010 0.1195809139 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000866_390 0.1197780527 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
5 Hb_000059_080 0.1479092347 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
6 Hb_022108_010 0.1527222397 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
7 Hb_007320_020 0.1538659419 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
8 Hb_003212_010 0.1539843352 - - sucrose transporter 4 [Hevea brasiliensis]
9 Hb_054865_030 0.1580348161 - - -
10 Hb_010813_030 0.1609464547 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
11 Hb_132515_010 0.163934236 - - phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_003649_030 0.1662351031 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
13 Hb_003767_010 0.1706238575 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
14 Hb_000603_120 0.1713760315 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
15 Hb_000644_040 0.17167943 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
16 Hb_000600_080 0.1727251095 - - -
17 Hb_000597_080 0.1756487613 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
18 Hb_001971_020 0.1778977307 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
19 Hb_085010_010 0.1825015123 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
20 Hb_018212_020 0.1835080235 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]

Gene co-expression network

sample Hb_004713_050 Hb_004713_050 Hb_002997_050 Hb_002997_050 Hb_004713_050--Hb_002997_050 Hb_064482_010 Hb_064482_010 Hb_004713_050--Hb_064482_010 Hb_000866_390 Hb_000866_390 Hb_004713_050--Hb_000866_390 Hb_000059_080 Hb_000059_080 Hb_004713_050--Hb_000059_080 Hb_022108_010 Hb_022108_010 Hb_004713_050--Hb_022108_010 Hb_007320_020 Hb_007320_020 Hb_004713_050--Hb_007320_020 Hb_002997_050--Hb_064482_010 Hb_000644_040 Hb_000644_040 Hb_002997_050--Hb_000644_040 Hb_018212_020 Hb_018212_020 Hb_002997_050--Hb_018212_020 Hb_002555_030 Hb_002555_030 Hb_002997_050--Hb_002555_030 Hb_010813_030 Hb_010813_030 Hb_002997_050--Hb_010813_030 Hb_064482_010--Hb_000644_040 Hb_132515_010 Hb_132515_010 Hb_064482_010--Hb_132515_010 Hb_009510_060 Hb_009510_060 Hb_064482_010--Hb_009510_060 Hb_064482_010--Hb_002555_030 Hb_003649_030 Hb_003649_030 Hb_000866_390--Hb_003649_030 Hb_085010_010 Hb_085010_010 Hb_000866_390--Hb_085010_010 Hb_000866_390--Hb_000059_080 Hb_001971_020 Hb_001971_020 Hb_000866_390--Hb_001971_020 Hb_001411_100 Hb_001411_100 Hb_000866_390--Hb_001411_100 Hb_003212_010 Hb_003212_010 Hb_000059_080--Hb_003212_010 Hb_000059_080--Hb_007320_020 Hb_003767_010 Hb_003767_010 Hb_000059_080--Hb_003767_010 Hb_000264_340 Hb_000264_340 Hb_000059_080--Hb_000264_340 Hb_005470_040 Hb_005470_040 Hb_000059_080--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000059_080--Hb_109489_010 Hb_004055_100 Hb_004055_100 Hb_022108_010--Hb_004055_100 Hb_001907_020 Hb_001907_020 Hb_022108_010--Hb_001907_020 Hb_005542_110 Hb_005542_110 Hb_022108_010--Hb_005542_110 Hb_000684_010 Hb_000684_010 Hb_022108_010--Hb_000684_010 Hb_000120_980 Hb_000120_980 Hb_022108_010--Hb_000120_980 Hb_003469_010 Hb_003469_010 Hb_022108_010--Hb_003469_010 Hb_000685_040 Hb_000685_040 Hb_007320_020--Hb_000685_040 Hb_007320_020--Hb_001971_020 Hb_007320_020--Hb_003767_010 Hb_010812_140 Hb_010812_140 Hb_007320_020--Hb_010812_140 Hb_000377_160 Hb_000377_160 Hb_007320_020--Hb_000377_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.963814 0.00943273 0.325507 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.969551 0.81029

CAGE analysis