Hb_022108_010

Information

Type -
Description -
Location Contig22108: 5816-7422
Sequence    

Annotation

kegg
ID egr:104429318
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1
nr
ID KHN34904.1
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID A0A0B2RRL9
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Glycine soja GN=glysoja_004670 PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22816: 6427-6638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022108_010 0.0 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
2 Hb_004055_100 0.0883843687 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
3 Hb_001907_020 0.1035646455 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
4 Hb_005542_110 0.1229272104 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
5 Hb_000684_010 0.1313170542 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000120_980 0.1328655917 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
7 Hb_003469_010 0.1486519129 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
8 Hb_004713_050 0.1527222397 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
9 Hb_000876_050 0.1592577975 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
10 Hb_010813_030 0.1631945581 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
11 Hb_011174_100 0.1633791537 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_008195_020 0.1645734975 - - Vacuolar-processing enzyme precursor [Ricinus communis]
13 Hb_005333_100 0.1656337511 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000649_280 0.169972095 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
15 Hb_002475_100 0.1709386863 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
16 Hb_011344_140 0.1737802176 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
17 Hb_007709_010 0.1752562564 - - -
18 Hb_000866_390 0.1760767231 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
19 Hb_007320_020 0.1834979726 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
20 Hb_000603_120 0.1861274087 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_022108_010 Hb_022108_010 Hb_004055_100 Hb_004055_100 Hb_022108_010--Hb_004055_100 Hb_001907_020 Hb_001907_020 Hb_022108_010--Hb_001907_020 Hb_005542_110 Hb_005542_110 Hb_022108_010--Hb_005542_110 Hb_000684_010 Hb_000684_010 Hb_022108_010--Hb_000684_010 Hb_000120_980 Hb_000120_980 Hb_022108_010--Hb_000120_980 Hb_003469_010 Hb_003469_010 Hb_022108_010--Hb_003469_010 Hb_004055_100--Hb_005542_110 Hb_005333_100 Hb_005333_100 Hb_004055_100--Hb_005333_100 Hb_004055_100--Hb_001907_020 Hb_004055_100--Hb_000120_980 Hb_004055_100--Hb_000684_010 Hb_011344_140 Hb_011344_140 Hb_001907_020--Hb_011344_140 Hb_000649_280 Hb_000649_280 Hb_001907_020--Hb_000649_280 Hb_026053_030 Hb_026053_030 Hb_001907_020--Hb_026053_030 Hb_002045_220 Hb_002045_220 Hb_001907_020--Hb_002045_220 Hb_005542_110--Hb_000684_010 Hb_011174_100 Hb_011174_100 Hb_005542_110--Hb_011174_100 Hb_005542_110--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_005542_110--Hb_000876_050 Hb_000976_060 Hb_000976_060 Hb_005542_110--Hb_000976_060 Hb_000684_010--Hb_000120_980 Hb_000684_010--Hb_005333_100 Hb_000684_010--Hb_000876_050 Hb_001675_130 Hb_001675_130 Hb_000684_010--Hb_001675_130 Hb_007709_010 Hb_007709_010 Hb_000684_010--Hb_007709_010 Hb_000120_980--Hb_005333_100 Hb_000120_980--Hb_000876_050 Hb_000120_980--Hb_005542_110 Hb_000086_370 Hb_000086_370 Hb_000120_980--Hb_000086_370 Hb_002475_100 Hb_002475_100 Hb_000120_980--Hb_002475_100 Hb_003469_010--Hb_004055_100 Hb_003469_010--Hb_005542_110 Hb_020581_040 Hb_020581_040 Hb_003469_010--Hb_020581_040 Hb_001454_160 Hb_001454_160 Hb_003469_010--Hb_001454_160 Hb_003469_010--Hb_011174_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.79906 0.0753242 0.514882 0.0195475 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.19417 1.51663

CAGE analysis