Hb_002045_220

Information

Type -
Description -
Location Contig2045: 199832-202739
Sequence    

Annotation

kegg
ID rcu:RCOM_0991190
description RNA binding protein, putative
nr
ID XP_012092139.1
description PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
swissprot
ID F4K2F0
description Protein EMSY-LIKE 3 OS=Arabidopsis thaliana GN=EML3 PE=1 SV=1
trembl
ID A0A067JC50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21858 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21052: 202468-202636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_220 0.0 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
2 Hb_011344_140 0.0809940105 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
3 Hb_000412_090 0.1073041063 - - receptor serine/threonine kinase, putative [Ricinus communis]
4 Hb_010921_060 0.1137731815 - - ATP binding protein, putative [Ricinus communis]
5 Hb_004007_230 0.1223710645 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
6 Hb_000465_380 0.1301089572 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_001907_020 0.1302039437 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
8 Hb_000668_160 0.13027982 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
9 Hb_000044_050 0.1331992385 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
10 Hb_026053_030 0.1346410758 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
11 Hb_000333_120 0.1405977386 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
12 Hb_009803_030 0.1413495596 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
13 Hb_000685_130 0.1418572321 - - PREDICTED: uncharacterized protein LOC105351820 [Fragaria vesca subsp. vesca]
14 Hb_108055_010 0.1439853926 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_002239_020 0.1466482176 - - MLO, putative [Theobroma cacao]
16 Hb_000819_010 0.1482339372 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
17 Hb_000563_120 0.1492650317 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
18 Hb_129399_010 0.1505253239 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000377_160 0.153699605 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
20 Hb_008195_020 0.1537892519 - - Vacuolar-processing enzyme precursor [Ricinus communis]

Gene co-expression network

sample Hb_002045_220 Hb_002045_220 Hb_011344_140 Hb_011344_140 Hb_002045_220--Hb_011344_140 Hb_000412_090 Hb_000412_090 Hb_002045_220--Hb_000412_090 Hb_010921_060 Hb_010921_060 Hb_002045_220--Hb_010921_060 Hb_004007_230 Hb_004007_230 Hb_002045_220--Hb_004007_230 Hb_000465_380 Hb_000465_380 Hb_002045_220--Hb_000465_380 Hb_001907_020 Hb_001907_020 Hb_002045_220--Hb_001907_020 Hb_011344_140--Hb_001907_020 Hb_011344_140--Hb_010921_060 Hb_011344_140--Hb_000465_380 Hb_011344_140--Hb_000412_090 Hb_000649_280 Hb_000649_280 Hb_011344_140--Hb_000649_280 Hb_000685_130 Hb_000685_130 Hb_000412_090--Hb_000685_130 Hb_001515_030 Hb_001515_030 Hb_000412_090--Hb_001515_030 Hb_005569_030 Hb_005569_030 Hb_000412_090--Hb_005569_030 Hb_007420_010 Hb_007420_010 Hb_000412_090--Hb_007420_010 Hb_002239_020 Hb_002239_020 Hb_010921_060--Hb_002239_020 Hb_000819_010 Hb_000819_010 Hb_010921_060--Hb_000819_010 Hb_010921_060--Hb_000465_380 Hb_000668_160 Hb_000668_160 Hb_010921_060--Hb_000668_160 Hb_000521_290 Hb_000521_290 Hb_010921_060--Hb_000521_290 Hb_026053_030 Hb_026053_030 Hb_004007_230--Hb_026053_030 Hb_001357_360 Hb_001357_360 Hb_004007_230--Hb_001357_360 Hb_004143_140 Hb_004143_140 Hb_004007_230--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_004007_230--Hb_000044_050 Hb_003077_140 Hb_003077_140 Hb_004007_230--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_004007_230--Hb_000767_010 Hb_000029_180 Hb_000029_180 Hb_000465_380--Hb_000029_180 Hb_108055_010 Hb_108055_010 Hb_000465_380--Hb_108055_010 Hb_030370_070 Hb_030370_070 Hb_000465_380--Hb_030370_070 Hb_129399_010 Hb_129399_010 Hb_000465_380--Hb_129399_010 Hb_000465_380--Hb_002239_020 Hb_022108_010 Hb_022108_010 Hb_001907_020--Hb_022108_010 Hb_001907_020--Hb_000649_280 Hb_004055_100 Hb_004055_100 Hb_001907_020--Hb_004055_100 Hb_001907_020--Hb_026053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.044809 17.0523 3.06556 2.26468 0.0419538 0.0218431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127398 0.160378 0.0757942 5.60514 7.72672

CAGE analysis