Hb_000412_090

Information

Type -
Description -
Location Contig412: 216602-219643
Sequence    

Annotation

kegg
ID rcu:RCOM_1579690
description receptor serine/threonine kinase, putative (EC:2.7.10.2)
nr
ID XP_002513562.1
description receptor serine/threonine kinase, putative [Ricinus communis]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID B9RIJ3
description Receptor serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_1579690 PE=3 SV=1
Gene Ontology
ID GO:0000166
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40799: 217221-218666 , PASA_asmbl_40800: 218963-219241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000412_090 0.0 - - receptor serine/threonine kinase, putative [Ricinus communis]
2 Hb_000685_130 0.0820511222 - - PREDICTED: uncharacterized protein LOC105351820 [Fragaria vesca subsp. vesca]
3 Hb_001515_030 0.1052690963 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_002045_220 0.1073041063 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
5 Hb_005569_030 0.1077549076 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
6 Hb_011344_140 0.110896416 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
7 Hb_007420_010 0.1141183868 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
8 Hb_010921_060 0.1241015854 - - ATP binding protein, putative [Ricinus communis]
9 Hb_033153_040 0.1255471494 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_009803_030 0.1257034459 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
11 Hb_167272_010 0.1300190459 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
12 Hb_000705_130 0.1339254919 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002890_320 0.1354991296 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
14 Hb_000313_100 0.1383915798 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
15 Hb_000177_130 0.1385442087 - - wall-associated kinase, putative [Ricinus communis]
16 Hb_033312_090 0.1398420894 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
17 Hb_001538_050 0.1422448776 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
18 Hb_002239_020 0.1452899069 - - MLO, putative [Theobroma cacao]
19 Hb_001534_150 0.1486011564 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
20 Hb_000347_380 0.1492613925 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000412_090 Hb_000412_090 Hb_000685_130 Hb_000685_130 Hb_000412_090--Hb_000685_130 Hb_001515_030 Hb_001515_030 Hb_000412_090--Hb_001515_030 Hb_002045_220 Hb_002045_220 Hb_000412_090--Hb_002045_220 Hb_005569_030 Hb_005569_030 Hb_000412_090--Hb_005569_030 Hb_011344_140 Hb_011344_140 Hb_000412_090--Hb_011344_140 Hb_007420_010 Hb_007420_010 Hb_000412_090--Hb_007420_010 Hb_134932_010 Hb_134932_010 Hb_000685_130--Hb_134932_010 Hb_004994_190 Hb_004994_190 Hb_000685_130--Hb_004994_190 Hb_000685_130--Hb_001515_030 Hb_000685_130--Hb_002045_220 Hb_000685_130--Hb_005569_030 Hb_167272_010 Hb_167272_010 Hb_001515_030--Hb_167272_010 Hb_009803_030 Hb_009803_030 Hb_001515_030--Hb_009803_030 Hb_001515_030--Hb_007420_010 Hb_001515_030--Hb_005569_030 Hb_114310_050 Hb_114310_050 Hb_001515_030--Hb_114310_050 Hb_008040_060 Hb_008040_060 Hb_001515_030--Hb_008040_060 Hb_002045_220--Hb_011344_140 Hb_010921_060 Hb_010921_060 Hb_002045_220--Hb_010921_060 Hb_004007_230 Hb_004007_230 Hb_002045_220--Hb_004007_230 Hb_000465_380 Hb_000465_380 Hb_002045_220--Hb_000465_380 Hb_001907_020 Hb_001907_020 Hb_002045_220--Hb_001907_020 Hb_000313_100 Hb_000313_100 Hb_005569_030--Hb_000313_100 Hb_033153_040 Hb_033153_040 Hb_005569_030--Hb_033153_040 Hb_175670_010 Hb_175670_010 Hb_005569_030--Hb_175670_010 Hb_002890_320 Hb_002890_320 Hb_005569_030--Hb_002890_320 Hb_005569_030--Hb_167272_010 Hb_011344_140--Hb_001907_020 Hb_011344_140--Hb_010921_060 Hb_011344_140--Hb_000465_380 Hb_000649_280 Hb_000649_280 Hb_011344_140--Hb_000649_280 Hb_007420_010--Hb_167272_010 Hb_000501_040 Hb_000501_040 Hb_007420_010--Hb_000501_040 Hb_007420_010--Hb_114310_050 Hb_007420_020 Hb_007420_020 Hb_007420_010--Hb_007420_020 Hb_007420_010--Hb_009803_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.55914 0.490255 0.26499 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0249638 0 0 0.50839 0.662288

CAGE analysis