Hb_002239_020

Information

Type -
Description -
Location Contig2239: 6044-21474
Sequence    

Annotation

kegg
ID tcc:TCM_041068
description MLO, putative
nr
ID XP_007015440.1
description MLO, putative [Theobroma cacao]
swissprot
ID Q94KB9
description MLO-like protein 3 OS=Arabidopsis thaliana GN=MLO3 PE=2 SV=1
trembl
ID A0A061GZH8
description MLO-like protein OS=Theobroma cacao GN=MLO PE=3 SV=1
Gene Ontology
ID GO:0016020
description mlo-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23273: 5914-8309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002239_020 0.0 - - MLO, putative [Theobroma cacao]
2 Hb_010921_060 0.0863531442 - - ATP binding protein, putative [Ricinus communis]
3 Hb_009247_030 0.0941536206 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_002097_210 0.1034563226 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007237_090 0.1047107414 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000465_380 0.1069713462 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_008040_060 0.1109647966 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
8 Hb_006615_190 0.1152552604 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
9 Hb_000819_010 0.1165865076 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
10 Hb_000072_160 0.1179265874 - - proline oxidase [Manihot esculenta]
11 Hb_011344_140 0.1180153965 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
12 Hb_001515_030 0.1189201657 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_030370_070 0.1230126997 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000668_160 0.1252089283 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
15 Hb_001534_150 0.1256118358 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
16 Hb_145139_010 0.1270426548 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
17 Hb_084127_010 0.1278675932 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_009803_030 0.1279978569 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
19 Hb_002475_010 0.1294821829 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
20 Hb_006052_040 0.1311202254 - - pyruvate decarboxylase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002239_020 Hb_002239_020 Hb_010921_060 Hb_010921_060 Hb_002239_020--Hb_010921_060 Hb_009247_030 Hb_009247_030 Hb_002239_020--Hb_009247_030 Hb_002097_210 Hb_002097_210 Hb_002239_020--Hb_002097_210 Hb_007237_090 Hb_007237_090 Hb_002239_020--Hb_007237_090 Hb_000465_380 Hb_000465_380 Hb_002239_020--Hb_000465_380 Hb_008040_060 Hb_008040_060 Hb_002239_020--Hb_008040_060 Hb_000819_010 Hb_000819_010 Hb_010921_060--Hb_000819_010 Hb_010921_060--Hb_000465_380 Hb_000668_160 Hb_000668_160 Hb_010921_060--Hb_000668_160 Hb_011344_140 Hb_011344_140 Hb_010921_060--Hb_011344_140 Hb_000521_290 Hb_000521_290 Hb_010921_060--Hb_000521_290 Hb_014361_130 Hb_014361_130 Hb_009247_030--Hb_014361_130 Hb_009247_030--Hb_002097_210 Hb_002571_010 Hb_002571_010 Hb_009247_030--Hb_002571_010 Hb_000072_160 Hb_000072_160 Hb_009247_030--Hb_000072_160 Hb_009247_030--Hb_000819_010 Hb_027474_010 Hb_027474_010 Hb_002097_210--Hb_027474_010 Hb_008550_030 Hb_008550_030 Hb_002097_210--Hb_008550_030 Hb_145139_010 Hb_145139_010 Hb_002097_210--Hb_145139_010 Hb_001677_120 Hb_001677_120 Hb_002097_210--Hb_001677_120 Hb_002475_010 Hb_002475_010 Hb_002097_210--Hb_002475_010 Hb_084127_010 Hb_084127_010 Hb_007237_090--Hb_084127_010 Hb_006615_190 Hb_006615_190 Hb_007237_090--Hb_006615_190 Hb_000579_220 Hb_000579_220 Hb_007237_090--Hb_000579_220 Hb_007237_090--Hb_000072_160 Hb_000172_010 Hb_000172_010 Hb_007237_090--Hb_000172_010 Hb_000521_210 Hb_000521_210 Hb_007237_090--Hb_000521_210 Hb_000029_180 Hb_000029_180 Hb_000465_380--Hb_000029_180 Hb_108055_010 Hb_108055_010 Hb_000465_380--Hb_108055_010 Hb_030370_070 Hb_030370_070 Hb_000465_380--Hb_030370_070 Hb_129399_010 Hb_129399_010 Hb_000465_380--Hb_129399_010 Hb_002529_080 Hb_002529_080 Hb_008040_060--Hb_002529_080 Hb_001248_170 Hb_001248_170 Hb_008040_060--Hb_001248_170 Hb_003914_050 Hb_003914_050 Hb_008040_060--Hb_003914_050 Hb_000027_060 Hb_000027_060 Hb_008040_060--Hb_000027_060 Hb_000000_070 Hb_000000_070 Hb_008040_060--Hb_000000_070 Hb_008667_030 Hb_008667_030 Hb_008040_060--Hb_008667_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.52198 0.210953 0.398776 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.400592 0.449523

CAGE analysis