Hb_002475_010

Information

Type -
Description -
Location Contig2475: 6103-9682
Sequence    

Annotation

kegg
ID rcu:RCOM_0458060
description leucine-rich repeat-containing protein, putative
nr
ID KDP25808.1
description hypothetical protein JCGZ_22530 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JSN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25722: 6942-7311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_010 0.0 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
2 Hb_004122_020 0.093832742 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
3 Hb_145139_010 0.0990874953 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
4 Hb_002968_010 0.101505959 - - PREDICTED: pectinesterase [Jatropha curcas]
5 Hb_006052_040 0.1054705814 - - pyruvate decarboxylase [Hevea brasiliensis]
6 Hb_002097_210 0.1090196168 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000656_370 0.1120034654 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_000000_070 0.1171425479 - - allene oxide synthase [Hevea brasiliensis]
9 Hb_008040_060 0.1200603698 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
10 Hb_006615_180 0.1223082944 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
11 Hb_000072_160 0.1238242509 - - proline oxidase [Manihot esculenta]
12 Hb_000976_340 0.1261639057 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_002239_020 0.1294821829 - - MLO, putative [Theobroma cacao]
14 Hb_002529_080 0.1298828187 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
15 Hb_006198_060 0.1300200722 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
16 Hb_002329_030 0.1302968815 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
17 Hb_007237_090 0.132907485 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008550_030 0.1341495293 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
19 Hb_000101_140 0.135577004 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000338_030 0.1362524498 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]

Gene co-expression network

sample Hb_002475_010 Hb_002475_010 Hb_004122_020 Hb_004122_020 Hb_002475_010--Hb_004122_020 Hb_145139_010 Hb_145139_010 Hb_002475_010--Hb_145139_010 Hb_002968_010 Hb_002968_010 Hb_002475_010--Hb_002968_010 Hb_006052_040 Hb_006052_040 Hb_002475_010--Hb_006052_040 Hb_002097_210 Hb_002097_210 Hb_002475_010--Hb_002097_210 Hb_000656_370 Hb_000656_370 Hb_002475_010--Hb_000656_370 Hb_004122_020--Hb_002968_010 Hb_004122_020--Hb_000656_370 Hb_004122_020--Hb_006052_040 Hb_006198_060 Hb_006198_060 Hb_004122_020--Hb_006198_060 Hb_000000_070 Hb_000000_070 Hb_004122_020--Hb_000000_070 Hb_145139_010--Hb_002968_010 Hb_000072_160 Hb_000072_160 Hb_145139_010--Hb_000072_160 Hb_145139_010--Hb_000656_370 Hb_145139_010--Hb_002097_210 Hb_002272_070 Hb_002272_070 Hb_145139_010--Hb_002272_070 Hb_002968_010--Hb_000656_370 Hb_000101_140 Hb_000101_140 Hb_002968_010--Hb_000101_140 Hb_002968_010--Hb_000072_160 Hb_006052_040--Hb_006198_060 Hb_003376_150 Hb_003376_150 Hb_006052_040--Hb_003376_150 Hb_004712_140 Hb_004712_140 Hb_006052_040--Hb_004712_140 Hb_041290_030 Hb_041290_030 Hb_006052_040--Hb_041290_030 Hb_027474_010 Hb_027474_010 Hb_002097_210--Hb_027474_010 Hb_008550_030 Hb_008550_030 Hb_002097_210--Hb_008550_030 Hb_001677_120 Hb_001677_120 Hb_002097_210--Hb_001677_120 Hb_002239_020 Hb_002239_020 Hb_002097_210--Hb_002239_020 Hb_000656_370--Hb_000101_140 Hb_002236_020 Hb_002236_020 Hb_000656_370--Hb_002236_020 Hb_024857_010 Hb_024857_010 Hb_000656_370--Hb_024857_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.01548 0.12867 0.361563 0.0222451 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.189536 0.174317

CAGE analysis