Hb_000101_140

Information

Type -
Description -
Location Contig101: 190625-195893
Sequence    

Annotation

kegg
ID rcu:RCOM_0592670
description amino acid transporter, putative
nr
ID XP_002526879.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9FEL7
description Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1
trembl
ID B9SLL0
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0592670 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin transporter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00568: 190800-195670 , PASA_asmbl_00569: 191165-195670 , PASA_asmbl_00570: 190499-195670 , PASA_asmbl_00571: 192740-195592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_140 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_000656_370 0.0665879399 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_000723_060 0.0683782642 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
4 Hb_002239_030 0.0732055245 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
5 Hb_002968_010 0.0744197146 - - PREDICTED: pectinesterase [Jatropha curcas]
6 Hb_006615_180 0.0776462538 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
7 Hb_000521_210 0.0847306211 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
8 Hb_060237_010 0.0931439421 - - conserved hypothetical protein [Ricinus communis]
9 Hb_024857_010 0.0994630952 - - glutaredoxin 2.1 [Hevea brasiliensis]
10 Hb_005147_020 0.1028772868 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
11 Hb_002248_090 0.104840353 - - metallothionein 3-like protein [Hevea brasiliensis]
12 Hb_003602_090 0.108507647 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
13 Hb_004122_020 0.1118975179 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
14 Hb_002236_020 0.1198221126 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
15 Hb_000922_290 0.1220017182 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
16 Hb_145139_010 0.122597598 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
17 Hb_000137_030 0.1240620824 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
18 Hb_000907_120 0.1245748556 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
19 Hb_000152_250 0.1277402984 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
20 Hb_002410_010 0.1278092383 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]

Gene co-expression network

sample Hb_000101_140 Hb_000101_140 Hb_000656_370 Hb_000656_370 Hb_000101_140--Hb_000656_370 Hb_000723_060 Hb_000723_060 Hb_000101_140--Hb_000723_060 Hb_002239_030 Hb_002239_030 Hb_000101_140--Hb_002239_030 Hb_002968_010 Hb_002968_010 Hb_000101_140--Hb_002968_010 Hb_006615_180 Hb_006615_180 Hb_000101_140--Hb_006615_180 Hb_000521_210 Hb_000521_210 Hb_000101_140--Hb_000521_210 Hb_000656_370--Hb_002968_010 Hb_002236_020 Hb_002236_020 Hb_000656_370--Hb_002236_020 Hb_145139_010 Hb_145139_010 Hb_000656_370--Hb_145139_010 Hb_004122_020 Hb_004122_020 Hb_000656_370--Hb_004122_020 Hb_024857_010 Hb_024857_010 Hb_000656_370--Hb_024857_010 Hb_000723_060--Hb_006615_180 Hb_003602_090 Hb_003602_090 Hb_000723_060--Hb_003602_090 Hb_000723_060--Hb_002239_030 Hb_000137_030 Hb_000137_030 Hb_000723_060--Hb_000137_030 Hb_000723_060--Hb_000656_370 Hb_002248_090 Hb_002248_090 Hb_002239_030--Hb_002248_090 Hb_002239_030--Hb_024857_010 Hb_002239_030--Hb_000656_370 Hb_060237_010 Hb_060237_010 Hb_002239_030--Hb_060237_010 Hb_002968_010--Hb_145139_010 Hb_002968_010--Hb_004122_020 Hb_000072_160 Hb_000072_160 Hb_002968_010--Hb_000072_160 Hb_002475_010 Hb_002475_010 Hb_002968_010--Hb_002475_010 Hb_006615_180--Hb_003602_090 Hb_000000_070 Hb_000000_070 Hb_006615_180--Hb_000000_070 Hb_009510_050 Hb_009510_050 Hb_006615_180--Hb_009510_050 Hb_117127_010 Hb_117127_010 Hb_006615_180--Hb_117127_010 Hb_084127_010 Hb_084127_010 Hb_000521_210--Hb_084127_010 Hb_000856_240 Hb_000856_240 Hb_000521_210--Hb_000856_240 Hb_000579_220 Hb_000579_220 Hb_000521_210--Hb_000579_220 Hb_000152_250 Hb_000152_250 Hb_000521_210--Hb_000152_250 Hb_000907_120 Hb_000907_120 Hb_000521_210--Hb_000907_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177301 75.3326 7.93825 35.9232 0.178663 0.215322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0245013 19.768 5.60117

CAGE analysis