Hb_060237_010

Information

Type -
Description -
Location Contig60237: 7242-9734
Sequence    

Annotation

kegg
ID rcu:RCOM_1619770
description hypothetical protein
nr
ID XP_002512045.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID B9REA6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1619770 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50610: 7222-9865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060237_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000101_140 0.0931439421 - - amino acid transporter, putative [Ricinus communis]
3 Hb_002239_030 0.0987155257 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
4 Hb_000656_370 0.1022526546 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_006615_180 0.1073263734 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
6 Hb_000723_060 0.1077917897 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
7 Hb_002968_010 0.1205866917 - - PREDICTED: pectinesterase [Jatropha curcas]
8 Hb_000521_210 0.1228669167 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
9 Hb_000137_030 0.1239291808 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
10 Hb_003602_090 0.1285308674 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
11 Hb_002410_010 0.1314058681 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
12 Hb_000907_120 0.1353151752 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
13 Hb_002248_090 0.1359978985 - - metallothionein 3-like protein [Hevea brasiliensis]
14 Hb_145139_010 0.1366826365 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
15 Hb_000094_010 0.1373487072 - - lrr receptor protein kinase, putative [Ricinus communis]
16 Hb_009510_050 0.1377009015 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000000_070 0.1377016509 - - allene oxide synthase [Hevea brasiliensis]
18 Hb_002529_080 0.1377159318 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
19 Hb_117127_010 0.1392688771 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
20 Hb_004122_020 0.1416832647 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]

Gene co-expression network

sample Hb_060237_010 Hb_060237_010 Hb_000101_140 Hb_000101_140 Hb_060237_010--Hb_000101_140 Hb_002239_030 Hb_002239_030 Hb_060237_010--Hb_002239_030 Hb_000656_370 Hb_000656_370 Hb_060237_010--Hb_000656_370 Hb_006615_180 Hb_006615_180 Hb_060237_010--Hb_006615_180 Hb_000723_060 Hb_000723_060 Hb_060237_010--Hb_000723_060 Hb_002968_010 Hb_002968_010 Hb_060237_010--Hb_002968_010 Hb_000101_140--Hb_000656_370 Hb_000101_140--Hb_000723_060 Hb_000101_140--Hb_002239_030 Hb_000101_140--Hb_002968_010 Hb_000101_140--Hb_006615_180 Hb_000521_210 Hb_000521_210 Hb_000101_140--Hb_000521_210 Hb_002239_030--Hb_000723_060 Hb_002248_090 Hb_002248_090 Hb_002239_030--Hb_002248_090 Hb_024857_010 Hb_024857_010 Hb_002239_030--Hb_024857_010 Hb_002239_030--Hb_000656_370 Hb_000656_370--Hb_002968_010 Hb_002236_020 Hb_002236_020 Hb_000656_370--Hb_002236_020 Hb_145139_010 Hb_145139_010 Hb_000656_370--Hb_145139_010 Hb_004122_020 Hb_004122_020 Hb_000656_370--Hb_004122_020 Hb_000656_370--Hb_024857_010 Hb_003602_090 Hb_003602_090 Hb_006615_180--Hb_003602_090 Hb_006615_180--Hb_000723_060 Hb_000000_070 Hb_000000_070 Hb_006615_180--Hb_000000_070 Hb_009510_050 Hb_009510_050 Hb_006615_180--Hb_009510_050 Hb_117127_010 Hb_117127_010 Hb_006615_180--Hb_117127_010 Hb_000723_060--Hb_003602_090 Hb_000137_030 Hb_000137_030 Hb_000723_060--Hb_000137_030 Hb_000723_060--Hb_000656_370 Hb_002968_010--Hb_145139_010 Hb_002968_010--Hb_004122_020 Hb_000072_160 Hb_000072_160 Hb_002968_010--Hb_000072_160 Hb_002475_010 Hb_002475_010 Hb_002968_010--Hb_002475_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0234252 14.3305 2.1489 7.38594 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.265834 0.0697271 0.0265836 3.98174 1.24491

CAGE analysis