Hb_002968_010

Information

Type -
Description -
Location Contig2968: 2514-5771
Sequence    

Annotation

kegg
ID rcu:RCOM_0708510
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_012077095.1
description PREDICTED: pectinesterase [Jatropha curcas]
swissprot
ID Q3E989
description Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1
trembl
ID B9RR27
description Pectinesterase OS=Ricinus communis GN=RCOM_0708510 PE=3 SV=1
Gene Ontology
ID GO:0005618
description plant invertase pectin methylesterase inhibitor superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31034: 2600-4760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002968_010 0.0 - - PREDICTED: pectinesterase [Jatropha curcas]
2 Hb_000656_370 0.0568014011 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_000101_140 0.0744197146 - - amino acid transporter, putative [Ricinus communis]
4 Hb_145139_010 0.07587028 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
5 Hb_004122_020 0.084204992 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
6 Hb_000072_160 0.0848632039 - - proline oxidase [Manihot esculenta]
7 Hb_002475_010 0.101505959 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
8 Hb_002236_020 0.1055925464 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
9 Hb_000521_210 0.1059773996 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_002239_030 0.1062021081 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
11 Hb_007237_090 0.1080160583 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002329_030 0.1143783598 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
13 Hb_000007_210 0.1144217743 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
14 Hb_006615_180 0.1161035402 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
15 Hb_006615_190 0.1176323328 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
16 Hb_000172_010 0.1178390463 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
17 Hb_084127_010 0.1181503835 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_024857_010 0.1187317108 - - glutaredoxin 2.1 [Hevea brasiliensis]
19 Hb_000922_290 0.118943329 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
20 Hb_014361_130 0.1200535169 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]

Gene co-expression network

sample Hb_002968_010 Hb_002968_010 Hb_000656_370 Hb_000656_370 Hb_002968_010--Hb_000656_370 Hb_000101_140 Hb_000101_140 Hb_002968_010--Hb_000101_140 Hb_145139_010 Hb_145139_010 Hb_002968_010--Hb_145139_010 Hb_004122_020 Hb_004122_020 Hb_002968_010--Hb_004122_020 Hb_000072_160 Hb_000072_160 Hb_002968_010--Hb_000072_160 Hb_002475_010 Hb_002475_010 Hb_002968_010--Hb_002475_010 Hb_000656_370--Hb_000101_140 Hb_002236_020 Hb_002236_020 Hb_000656_370--Hb_002236_020 Hb_000656_370--Hb_145139_010 Hb_000656_370--Hb_004122_020 Hb_024857_010 Hb_024857_010 Hb_000656_370--Hb_024857_010 Hb_000723_060 Hb_000723_060 Hb_000101_140--Hb_000723_060 Hb_002239_030 Hb_002239_030 Hb_000101_140--Hb_002239_030 Hb_006615_180 Hb_006615_180 Hb_000101_140--Hb_006615_180 Hb_000521_210 Hb_000521_210 Hb_000101_140--Hb_000521_210 Hb_145139_010--Hb_000072_160 Hb_002097_210 Hb_002097_210 Hb_145139_010--Hb_002097_210 Hb_002272_070 Hb_002272_070 Hb_145139_010--Hb_002272_070 Hb_145139_010--Hb_002475_010 Hb_006052_040 Hb_006052_040 Hb_004122_020--Hb_006052_040 Hb_006198_060 Hb_006198_060 Hb_004122_020--Hb_006198_060 Hb_004122_020--Hb_002475_010 Hb_000000_070 Hb_000000_070 Hb_004122_020--Hb_000000_070 Hb_000072_160--Hb_002272_070 Hb_002329_030 Hb_002329_030 Hb_000072_160--Hb_002329_030 Hb_006615_190 Hb_006615_190 Hb_000072_160--Hb_006615_190 Hb_014361_130 Hb_014361_130 Hb_000072_160--Hb_014361_130 Hb_002475_010--Hb_006052_040 Hb_002475_010--Hb_002097_210 Hb_002475_010--Hb_000656_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0430335 100.199 7.34251 40.9831 0.131143 0.0859756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0292577 22.972 12.8834

CAGE analysis