Hb_003602_090

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig3602: 80115-84450
Sequence    

Annotation

kegg
ID rcu:RCOM_1583650
description Auxin-responsive protein IAA19, putative
nr
ID XP_012068087.1
description PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
swissprot
ID Q38827
description Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1
trembl
ID A0A067L2Q8
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_15935 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37110: 79552-84481 , PASA_asmbl_37111: 79530-84409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_090 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
2 Hb_009510_050 0.055724067 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006615_180 0.0575595307 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
4 Hb_000723_060 0.084908722 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
5 Hb_082870_010 0.0922703688 - - Disease resistance protein RFL1, putative [Ricinus communis]
6 Hb_117127_010 0.1002333496 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
7 Hb_019040_010 0.1027296987 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
8 Hb_000101_140 0.108507647 - - amino acid transporter, putative [Ricinus communis]
9 Hb_000000_070 0.1097927558 - - allene oxide synthase [Hevea brasiliensis]
10 Hb_002239_030 0.1124514157 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
11 Hb_000098_250 0.1179062963 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
12 Hb_017604_020 0.120735035 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
13 Hb_002410_010 0.1208097613 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
14 Hb_005000_200 0.1208280928 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
15 Hb_060237_010 0.1285308674 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001699_050 0.1293210549 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
17 Hb_041145_010 0.1293308407 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
18 Hb_003556_070 0.1342296735 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_032050_070 0.1355589987 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
20 Hb_002529_080 0.1367838008 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_003602_090 Hb_003602_090 Hb_009510_050 Hb_009510_050 Hb_003602_090--Hb_009510_050 Hb_006615_180 Hb_006615_180 Hb_003602_090--Hb_006615_180 Hb_000723_060 Hb_000723_060 Hb_003602_090--Hb_000723_060 Hb_082870_010 Hb_082870_010 Hb_003602_090--Hb_082870_010 Hb_117127_010 Hb_117127_010 Hb_003602_090--Hb_117127_010 Hb_019040_010 Hb_019040_010 Hb_003602_090--Hb_019040_010 Hb_009510_050--Hb_006615_180 Hb_009510_050--Hb_082870_010 Hb_009510_050--Hb_117127_010 Hb_009510_050--Hb_000723_060 Hb_017604_020 Hb_017604_020 Hb_009510_050--Hb_017604_020 Hb_006615_180--Hb_000723_060 Hb_000000_070 Hb_000000_070 Hb_006615_180--Hb_000000_070 Hb_000101_140 Hb_000101_140 Hb_006615_180--Hb_000101_140 Hb_006615_180--Hb_117127_010 Hb_000723_060--Hb_000101_140 Hb_002239_030 Hb_002239_030 Hb_000723_060--Hb_002239_030 Hb_000137_030 Hb_000137_030 Hb_000723_060--Hb_000137_030 Hb_000656_370 Hb_000656_370 Hb_000723_060--Hb_000656_370 Hb_082870_010--Hb_006615_180 Hb_082870_010--Hb_017604_020 Hb_082870_010--Hb_117127_010 Hb_000098_250 Hb_000098_250 Hb_082870_010--Hb_000098_250 Hb_117127_010--Hb_000098_250 Hb_008667_030 Hb_008667_030 Hb_117127_010--Hb_008667_030 Hb_002410_010 Hb_002410_010 Hb_117127_010--Hb_002410_010 Hb_002529_080 Hb_002529_080 Hb_117127_010--Hb_002529_080 Hb_117127_010--Hb_000000_070 Hb_019040_010--Hb_009510_050 Hb_019040_010--Hb_006615_180 Hb_019040_010--Hb_082870_010 Hb_000771_030 Hb_000771_030 Hb_019040_010--Hb_000771_030 Hb_019040_010--Hb_017604_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14906 113.199 24.6522 50.8139 1.36729 1.07192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0793574 0.0156108 0.0593806 31.2011 7.51316

CAGE analysis