Hb_019040_010

Information

Type -
Description -
Location Contig19040: 4466-4885
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17130g
description POPTRDRAFT_556554; hypothetical protein
nr
ID XP_012084420.1
description PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
swissprot
ID P32295
description Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1
trembl
ID A0A067K737
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19629 PE=4 SV=1
Gene Ontology
ID GO:0009733
description indole-3-acetic acid-induced protein arg7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 024_I13.ab1: 4157-4852 , 032_N23.ab1: 4363-4846 , 053_N18.ab1: 4156-4852

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019040_010 0.0 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
2 Hb_003602_090 0.1027296987 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
3 Hb_009510_050 0.122054097 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006615_180 0.1231784212 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
5 Hb_082870_010 0.1239192923 - - Disease resistance protein RFL1, putative [Ricinus communis]
6 Hb_000771_030 0.1319826797 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
7 Hb_017604_020 0.1342049124 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
8 Hb_032050_070 0.1354445298 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
9 Hb_000098_250 0.1371315264 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
10 Hb_003556_070 0.1372439234 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_117127_010 0.1374526457 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
12 Hb_000092_080 0.1386337845 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_038742 [Vitis vinifera]
13 Hb_002324_050 0.1392544819 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
14 Hb_131662_010 0.1413784274 - - Insulin-degrading enzyme, putative [Ricinus communis]
15 Hb_065230_010 0.1429202696 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
16 Hb_068332_010 0.1456125303 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_000723_060 0.1488786564 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
18 Hb_001699_050 0.1488892146 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
19 Hb_000094_010 0.1506697593 - - lrr receptor protein kinase, putative [Ricinus communis]
20 Hb_002410_010 0.1514046024 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]

Gene co-expression network

sample Hb_019040_010 Hb_019040_010 Hb_003602_090 Hb_003602_090 Hb_019040_010--Hb_003602_090 Hb_009510_050 Hb_009510_050 Hb_019040_010--Hb_009510_050 Hb_006615_180 Hb_006615_180 Hb_019040_010--Hb_006615_180 Hb_082870_010 Hb_082870_010 Hb_019040_010--Hb_082870_010 Hb_000771_030 Hb_000771_030 Hb_019040_010--Hb_000771_030 Hb_017604_020 Hb_017604_020 Hb_019040_010--Hb_017604_020 Hb_003602_090--Hb_009510_050 Hb_003602_090--Hb_006615_180 Hb_000723_060 Hb_000723_060 Hb_003602_090--Hb_000723_060 Hb_003602_090--Hb_082870_010 Hb_117127_010 Hb_117127_010 Hb_003602_090--Hb_117127_010 Hb_009510_050--Hb_006615_180 Hb_009510_050--Hb_082870_010 Hb_009510_050--Hb_117127_010 Hb_009510_050--Hb_000723_060 Hb_009510_050--Hb_017604_020 Hb_006615_180--Hb_000723_060 Hb_000000_070 Hb_000000_070 Hb_006615_180--Hb_000000_070 Hb_000101_140 Hb_000101_140 Hb_006615_180--Hb_000101_140 Hb_006615_180--Hb_117127_010 Hb_082870_010--Hb_006615_180 Hb_082870_010--Hb_017604_020 Hb_082870_010--Hb_117127_010 Hb_000098_250 Hb_000098_250 Hb_082870_010--Hb_000098_250 Hb_065230_010 Hb_065230_010 Hb_000771_030--Hb_065230_010 Hb_000417_120 Hb_000417_120 Hb_000771_030--Hb_000417_120 Hb_131662_010 Hb_131662_010 Hb_000771_030--Hb_131662_010 Hb_000771_030--Hb_000098_250 Hb_000598_020 Hb_000598_020 Hb_000771_030--Hb_000598_020 Hb_002410_010 Hb_002410_010 Hb_000771_030--Hb_002410_010 Hb_001699_050 Hb_001699_050 Hb_017604_020--Hb_001699_050 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_000808_160 Hb_000808_160 Hb_017604_020--Hb_000808_160 Hb_003556_070 Hb_003556_070 Hb_017604_020--Hb_003556_070 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48399 30.1613 9.74287 15.8747 0.21744 0.0697832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.428328 0 11.8263 3.05922

CAGE analysis